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GGACTGCTATACCTCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTAAAAAAGgtaagtcccccaaatagatgtgcattttgacaagaataagtagtttgcttttttttttttttttcttaaaaatgcagaaacgaaaagtcactttggtttt...
species | Glycine max |
transcript | GLYMA07G39450.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTAAAAAAG TTACCTCTCAGTGCAGTTACATCGATAATTGATGGCTTGAAGAGATTGTATEST: gi|298197514|gb|HO044993.1|HO044993
genomic: CTCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTAAAAAAGgtaagtcccc ... tctattttagTTACCTCTCAGTGCAGTTACATCGATAATTGATGGCTTGAAGAGATTGTAT
EST: TCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTNNNNNNNG TTACCTCTCAGTGCAGTTACATCGATAATTGATGGCTTGAAGAGATTGTAEST: gi|298174570|gb|HO017793.1|HO017793
genomic: TCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTAAAAAA-Ggtaagtcccc ... tctattttagTTACCTCTCAGTGCAGTTACATCGATAATTGATGGCTTGAAGAGATTGTA
EST: CTCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTAAAAAAG TTACCTCTCAGTGCAGTTACATCGATAATTGATGGCTTGAAGAGATTGTATEST: gi|151413214|gb|EV283022.1|EV283022
genomic: CTCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTAAAAAAGgtaagtcccc ... tctattttagTTACCTCTCAGTGCAGTTACATCGATAATTGATGGCTTGAAGAGATTGTAT
EST: CTCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTAAAAAAG TTACCTCTCAGTGCAGTTACATCGATAATTGATGGCTTGAAGAGATTGTAT
genomic: CTCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTAAAAAAGgtaagtcccc ... tctattttagTTACCTCTCAGTGCAGTTACATCGATAATTGATGGCTTGAAGAGATTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTGCTATACCTCAGCCTTTGCCACTCAATTCATGGGCTGCTCCAAAATCTGTAAAAAAGgtaagtcccccaaatagatgtgcattttgacaagaataagtagtttgcttttttttttttttttcttaaaaatgcagaaacgaaaagtcactttggtttt
- - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacgaaa