Sequence
atgc intronic sequence ATGC exonic sequenceATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctcaaagcaggaaactctttagaactatagcaattatagattgggtgctttgctgagttgtgctgaccaatatttattgcttcacttaggaca...
Basic information
species | Glycine max |
transcript | GLYMA07G39380.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 7
ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttc-tcaa-agcaggaaactctttagaactatagcaattatagattgggtgctttgctgagttgtgctgaccaatatttattgcttcacttaggaca--
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ATATACTCTGAAATGATTGGCAATGTTATGACTGATGCGAGATCCACTGGAAAATACTACCACTgtaagtttatcagcagcaacaaaataggttgtcatttaatagttatggactagtaagttggttc--ctctattga--aaaattatacacaccatgtgatgccat
upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 5'ss of exon 7
ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctcaaagcaggaaactctttagaactatagcaattatagattgggtgctttgctgagttgtgctgaccaatatttattgcttcacttaggaca
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ATATACTCAGAAATGATTGGAAATGTTATGATCGATGCGCGTTCCACGGGAAAATACTATCACTgtaagttt---------gttttctcttagcaaaatgaattttcttgatacaaa--tttactatatcatttcatctgttgattatctctatag--------
upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 7
ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctcaaagcaggaaactctttagaactatagcaattatagattgggtgctttgctgagttgtgctgaccaatatttattgcttcacttaggaca----
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ATTTATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGCTCAACTGGAAAATACTATCACTgtaagtatattgagggtcaaagtcatga-aaccaggttctttac---ctctgcattttgttcaaatgactcattttgaatttattacttattgaaatgtaatta
upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ12684 (Selaginella moellendorffii), 5'ss of exon 7
ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctcaaagcaggaaactctttagaactatagcaattatagattgggtgctttgct-gagttgtgctgaccaatatttattgcttcacttaggaca
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ATATATGCAGAAATGATTGGGAACATCATGGTAGACGCACGTTCTACGGGAAAATATTACCACTgtaag------aagtttgttgcctttagcttcttttaaagtccgtgacgaggactttctctcgagcag---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7591049|gb|AW706790.1|AW706790EST: GATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATT TTGGTCGGCTTATGGGACGTGCAGCTTCGCACATTACACTGGAATGTGCGT
genomic: GATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctc ... ttgtctgcagTTGTTCGGCTTATGGGACGTGCAGCTTCGCACATTACACTGGAATGTGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctcaaagcaggaaactctttagaactatagcaattatagattgggtgctttgctgagttgtgctgaccaatatttattgcttcacttaggaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgggtg