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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctcaaagcaggaaactctttagaactatagcaattatagattgggtgctttgctgagttgtgctgaccaatatttattgcttcacttaggaca...

Basic information

species Glycine max
transcript GLYMA07G39380.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 7
ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttc-tcaa-agcaggaaactctttagaactatagcaattatagattgggtgctttgctgagttgtgctgaccaatatttattgcttcacttaggaca--
|||||  | ||||||||||||||||||||||  |||||  |||| ||||||||||| ||||| ||||||||  |||  ||||  ||| |   | |   | ||  | |||| || | |    || | |    | |  |||  || |||     |  ||  |    |   
ATATACTCTGAAATGATTGGCAATGTTATGACTGATGCGAGATCCACTGGAAAATACTACCACTgtaagtttatcagcagcaacaaaataggttgtcatttaatagttatggactagtaagttggttc--ctctattga--aaaattatacacaccatgtgatgccat

upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 5'ss of exon 7
ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctcaaagcaggaaactctttagaactatagcaattatagattgggtgctttgctgagttgtgctgaccaatatttattgcttcacttaggaca
|||||  ||||||||||||| ||||||||||| ||||| || || || |||||||| || || ||||||||          |       |||| |  ||     || | |||       ||| ||   |  |     |   |  ||||  ||  |         
ATATACTCAGAAATGATTGGAAATGTTATGATCGATGCGCGTTCCACGGGAAAATACTATCACTgtaagttt---------gttttctcttagcaaaatgaattttcttgatacaaa--tttactatatcatttcatctgttgattatctctatag--------

upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 5'ss of exon 7
ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctcaaagcaggaaactctttagaactatagcaattatagattgggtgctttgctgagttgtgctgaccaatatttattgcttcacttaggaca----
|| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || || |||||||      ||    ||| || | | ||| |      |||     |  |   |||| | |  ||           ||||||| |||     |    |    
ATTTATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGCTCAACTGGAAAATACTATCACTgtaagtatattgagggtcaaagtcatga-aaccaggttctttac---ctctgcattttgttcaaatgactcattttgaatttattacttattgaaatgtaatta

upper sequence: GLYMA07G39380.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ12684 (Selaginella moellendorffii), 5'ss of exon 7
ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctcaaagcaggaaactctttagaactatagcaattatagattgggtgctttgct-gagttgtgctgaccaatatttattgcttcacttaggaca
|||||||||||||||||||| ||  | ||| |||| || || || || |||||||||||||| ||||||      |||   |   |  ||     || |   | |    ||   ||   ||  || |||  |                                 
ATATATGCAGAAATGATTGGGAACATCATGGTAGACGCACGTTCTACGGGAAAATATTACCACTgtaag------aagtttgttgcctttagcttcttttaaagtccgtgacgaggactttctctcgagcag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591049|gb|AW706790.1|AW706790
EST:     GATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATT                         TTGGTCGGCTTATGGGACGTGCAGCTTCGCACATTACACTGGAATGTGCGT
genomic: GATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATTgtaagttctc ... ttgtctgcagTTGTTCGGCTTATGGGACGTGCAGCTTCGCACATTACACTGGAATGTGCTT