1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TATGGGCATTTGATACAGAGACAGAGTGCTGGTCACTCATGGAGGCAAAGGGGGACATACCGgtaggaaattttgtttcatgacagtgtcaatgcttcagtgatagaaattgctcttgtgcattgttactattttgatattatattacatatttttgttcca...
species | Glycine max |
transcript | GLYMA07G38020.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGGGACATACCG GTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTGEST: gi|208182529|gb|GD980430.1|GD980430
genomic: GGGGGACATACCGgtaggaaatt ... ttcttgtcagGTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTG
EST: GGGGGACATACCG GTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTGEST: gi|207840571|gb|GD812248.1|GD812248
genomic: GGGGGACATACCGgtaggaaatt ... ttcttgtcagGTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTG
EST: CTGGTCACTCATGGAGGCAAAGGGGGGACATACCG GTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTGEST: gi|208138046|gb|GD939396.1|GD939396
genomic: CTGGTCACTCATGGAGGCAAA-GGGGGACATACCGgtaggaaatt ... ttcttgtcagGTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTG
EST: AGGGGGACATACCG GTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTG
genomic: AGGGGGACATACCGgtaggaaatt ... ttcttgtcagGTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGGCATTTGATACAGAGACAGAGTGCTGGTCACTCATGGAGGCAAAGGGGGACATACCGgtaggaaattttgtttcatgacagtgtcaatgcttcagtgatagaaattgctcttgtgcattgttactattttgatattatattacatatttttgttcca
- - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - GCAAAG