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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttccttatcttatgcaattcccttaatgaatcgtcattagcagttgtggagctaggatgttttagtaggggaggccaaatatataaaaaaatta...

Basic information

species Glycine max
transcript GLYMA07G37640.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208165713|gb|GD963701.1|GD963701
EST:     GAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGTAA
genomic: GAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193481453|gb|FK445536.1|FK445536
EST:     AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAG
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAG
EST: gi|23735206|gb|BU765872.1|BU765872
EST:     AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193552438|gb|FK509461.1|FK509461
EST:     GAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: GAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193616169|gb|FK570153.1|FK570153
EST:     GAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: GAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|208111814|gb|GD913312.1|GD913312
EST:     AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAA
EST: gi|193326774|gb|FK288651.1|FK288651
EST:     AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193730853|gb|FK666933.1|FK666933
EST:     AGTTCTTGGAAAAAAGAAATTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTTATAGCAGAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCT-ATAGCAGAA
EST: gi|193550632|gb|FK508467.1|FK508467
EST:     TTCTTGG-AAAAAGAATTTTGTTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: TTCTTGGAAAAAAGAA-TTTG-TTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193700539|gb|FK635084.1|FK635084
EST:     AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
EST: gi|193689585|gb|FK628828.1|FK628828
EST:     AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGG                         GTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA
genomic: AGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttcc ... atatgaacagGTATGATTGTGGGGTGTTTATGATCAAATATGCCGACTTCTATAGCAGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAACGGgtttgtttccttatcttatgcaattcccttaatgaatcgtcattagcagttgtggagctaggatgttttagtaggggaggccaaatatataaaaaaatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG