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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTGGCTGTAATGGCTGTTGTGCCAGCGGAGAAGCTTGCTGTCCACTTCCATGACACTTACGGGCAATCCCTTGCAAATATTCTTGTGTCCCTTCAAgtaagtcaacaaactatagctggaacttcatttgcttggctattgatagagtttattgaactttatcttcattacatgtaataaaagttcaaaactggtt...

Basic information

species Glycine max
transcript GLYMA07G36340.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36340.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g16350.1 (Oryza sativa), 5'ss of exon 7
GCTTTTGGCTGTAATGGCTGTTGTGCCAGCGGAGAAGCTTGCTGTCCACTTCCATGACACTTACGGGCAATCCCTTGCAAATATTCTTGTGTCCCTTCAAgtaagt---caacaaactatagctggaacttcatttgcttggctattgatagagtttattgaactttatcttcattacatgtaataaaagttcaaaactggtt
||||  |||||| |||    |||| |||  |||||||||||||||||| ||||| || || ||||| ||||| ||| ||||||| ||  | || || || ||||     || || |   ||     | | |||       | | | || | | |    |  |||   |     || | |||||||       | |||      
GCTTGAGGCTGTTATGTTCTTTGTTCCAAAGGAGAAGCTTGCTGTCCATTTCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAGgtaatcatccaccagatactaaacaaatcatcacacaga-gccaaatggttgtgaacttgtaacaacaaaga-atcatatgtaatttccccaccaaaaaaaa-

upper sequence: GLYMA07G36340.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G175071_T01 (Zea mays), 5'ss of exon 7
GCTTTTGGCTGTAATGGCTGTTGTGCCAGCGGAGAAGCTTGCTGTCCACTTCCATGACACTTACGGGCAATCCCTTGCAAATATTCTTGTGTCCCTTCAAgtaagtcaacaaactatagctggaacttcatttgcttggctattgat-agagtttattgaactt-tatcttcattacatgtaataaaagttcaaaactggtt
||||  ||| |  ||  | || || || | ||||||||| |||||||||||||| ||||| ||||| || |||||  | || |||||  | || ||||| ||||     |||||        |||   ||||| |   |       | | |  | ||  |||   | || || |  ||   |                    
GCTTGAGGCAGCTATCTCCGTCGTTCCCGTGGAGAAGCTCGCTGTCCACTTCCACGACACCTACGGCCAGTCCCTCTCGAACATTCTCATCTCTCTTCAGgtaa-----caaaccg-----agaataccatttacacagtcgaaagtgaaaagtgatcaaaccggtgtcctcttgtcaaccag-------------------

upper sequence: GLYMA07G36340.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G26800.2 (Arabidopsis thaliana), 5'ss of exon 8
GCTTTTGGCTGTAATGGCTGTTGTGCCAGCGGAGAAGCTTGCTGTCCACTTCCATGACACTTACGGGCAATCCCTTGCAAATATTCTTGTGTCCCTTCAAgtaagtcaacaaactatagctggaacttcatttgcttggctattgatagagtttattgaactttatcttcattacatgtaataaaagttcaaaactggtt
||||   || || ||||| |||||||||||||| ||||| ||||| ||||||||||| || || |||||| | |||||||| ||  | ||||| || || |||||||||  |   ||||  | |        |  |||  |||  ||| |  ||  |     ||||  |  | ||||||| |    || |||||   |  
GCTTGAAGCCGTGATGGCAGTTGTGCCAGCGGACAAGCTGGCTGTTCACTTCCATGATACCTATGGGCAAGCTCTTGCAAACATATTGGTGTCTCTCCAGgtaagtcaagcactaatagaagaa--------tatttgattataaatataacttcat-----ttatggtt-tgacatgtattg---gtgcaaaaacag--

upper sequence: GLYMA07G36340.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0009g02640.t01 (Vitis vinifera), 5'ss of exon 7
GCTTTTGGCTGTAATGGCTGTTGTGCCAGCGGAGAAGCTTGCTGTCCACTTCCATGACACTTACGGGCAATCCCTTGCAAATATTCTTGTGTCCCTTCAAgtaagtcaacaaactatagctgg-aacttcatttgcttggctattgatagagtttattgaactttatcttcattacatgtaataaaagttcaaaactggtt
||||   ||||||||||||||||| || |  |||||||||||||||||||||||||||||||| ||||| || ||| |||||||| |  | || || || ||| |  |||    |  |  ||  ||    | | |      | ||| ||  |  |  | | | ||         | | ||  | ||   | |    || | 
GCTTGAAGCTGTAATGGCTGTTGTTCCTGTTGAGAAGCTTGCTGTCCACTTCCATGACACTTATGGGCAGTCTCTTCCAAATATTTTACTATCGCTCCAGgtatgcaaacttcttgaaattgttaaagaaaataggaaaaatcttgttaatgcctgattatcctttaacaaggaatacgtttttaagaatgacctgtgat-