Sequence
atgc intronic sequence ATGC exonic sequenceGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAgtaagtttgctttctctcctacacaaaaaatataatctagacaacatcctactgtgacaggataattaggagtgatctttgtgaaaagtagaggacatag...
Basic information
species | Glycine max |
transcript | GLYMA07G34890.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G34890.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g36774.1 (Oryza sativa), 5'ss of exon 13
GCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAgtaagt---ttgctttctc-tcctacacaaaaaata-taatctagaca-acatcctactgtgacaggataattaggagtgatctttgtgaaaagtagaggacatag
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GCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATTGTTACAACAGTTGAAGGTTTAATTGTGAAAATATGCGAGGgtaggtgcctcacctagtcatctcacttatttactacttttccatttatatatgtcacaaaaattggactataaggagccattttagttcaa-gtaataaa-----
upper sequence: GLYMA07G34890.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g01690.t01 (Vitis vinifera), 5'ss of exon 13
GCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAgtaagtttgctttctctcctacacaaaaaatataatctagacaacatcctactgtgacaggataattaggagtgat---ctttgtgaaaagtagaggacatag
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GCAGGTGTGAGTGTCCCAGAGCTTGACTTGGAGCTGGCTAGTGGCACTTTGGGTGGAGTTGTTACAACTGTTGAAGGCTTGATTACAAAAATTTGTGAAAgtgagtgttttttcacttttgcattccattttgattccttttttcata-tgcta-aacatgaaaatttcctttgccacactctcaaatacgttgttgtttaa-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151399172|gb|EV269043.1|EV269043EST: TGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAATTAGTGAAA GCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGATAGTCTTGATGAACAGA
genomic: TGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAgtaagtttgc ... gcatatacagGCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGATAGTCTTGATGAACAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAgtaagtttgctttctctcctacacaaaaaatataatctagacaacatcctactgtgacaggataattaggagtgatctttgtgaaaagtagaggacatag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG