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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTGACTGAGCTCTCGTTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcctgtgctagatatacacttctaaatttgtgtgaatttctgatttacaaattacttttatgtcttcctactatactgactattgctctttcatattattattaaataactctttgtgcag

Basic information

species Glycine max
transcript GLYMA07G32190.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32190.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G070605_T01 (Zea mays), 5'ss of exon 7
ATCTTTGACTGAGCTCTCGTTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcctgtgctagatatacacttctaaatttgtgtgaatttctgatttacaaattacttttatgtcttcctactatactgactattgctctttcatattattattaaataactctttgtgcag
|||  | ||||||||||| |||||||||   |||||||| | ||| ||||| ||||||||||| ||||| ||| | ||||| ||||| ||||||||||||||   ||  |||    ||| | | ||       |||| | ||   |     | | |||   || |  |  || |                                                     
ATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCATCAATGCCATGATATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATGgt---ctgttgtttacgatttgctctc------ttgtcttaa---ccatccttctaatcgtttctg-gcattgcag---------------------------------------------------

upper sequence: GLYMA07G32190.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G083344_T03 (Zea mays), 5'ss of exon 7
ATCTTTGACTGAGCTCTCGTTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgtt-atctcctgtgctagatatacacttctaaatttgtgtgaatttctgatttacaaattacttttatgtcttcctactatactgactattgctctttcatattattattaaataactctttgtgcag
|||  | ||||| ||||| || || |||   |||||||| | ||| ||||| ||||| || || ||||| ||||||||||||||||| ||||| || |||||| ||||| |  ||     ||     | || ||     ||    |||   ||   |    ||  |||   | |  |||    |   ||||| | |    | | |                       
ATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCATTAATGCCATGATCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATGgtttatctctttggcctagcat-----tttacatcaaattgctcctctacattcttagcagctcctat--ttgctgacttactttcttattgttttcctttgtcacag--------------------

upper sequence: GLYMA07G32190.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 7
ATCTTTGACTGAGCTCTCGTTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcctgtgctagatatacacttctaaatttgtgtgaatttctgatttacaaattacttttatgtcttcctactatactgactattgctctttcatattattattaaataactctttgtgcag---------------------
||| ||||||||||| || ||||||||| | |||||||| |||||||||||||| || ||||||||||| ||| | || |||||||||||||| ||||||||||||| || | ||     |     | |    || | |    |  |||   | |||  ||   || ||      | ||   |||  |  ||| |||     | |   | || || |||   |  |                      
ATCATTGACTGAGCTATCATTCAACTGGATTGGCTTCATTAGTGCTATGATTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttctattctgctcttgactgttttttcttttttctggtcttga---ataaaacacacataggtg---gcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692862|gb|AW760961.1|AW760961
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|23728678|gb|BU762399.1|BU762399
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7691785|gb|AW759906.1|AW759906
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7691041|gb|AW759175.1|AW759175
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTTCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|120534368|gb|EH262501.1|EH262501
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTA
EST: gi|7796788|gb|AW782182.1|AW782182
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|14999814|gb|BI320628.1|BI320628
EST:     CAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: CAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|8669180|gb|BE190287.1|BE190287
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|15284741|gb|BI468632.1|BI468632
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|23063798|gb|BU578627.1|BU578627
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|16346698|gb|BI972293.1|BI972293
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26269548|gb|CA820611.1|CA820611
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|15199917|gb|BI424075.1|BI424075
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|17519248|gb|BM188290.1|BM188290
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|6481941|gb|AW201212.1|AW201212
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7796582|gb|AW781979.1|AW781979
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|14011803|gb|BG726725.1|BG726725
EST:     TACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|20498205|gb|BQ273135.1|BQ273135
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|20814778|gb|BQ299256.1|BQ299256
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|6481839|gb|AW201110.1|AW201110
EST:     AAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: AAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26269373|gb|CA820436.1|CA820436
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|17153411|gb|BM143344.1|BM143344
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7691923|gb|AW760040.1|AW760040
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|10237564|gb|BE806452.1|BE806452
EST:     TTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|8669191|gb|BE190298.1|BE190298
EST:     TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTTTGACTGAGCTCTCGTTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATCTCCTTCACATACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcctgtgctagatatacacttctaaatttgtgtgaatttctgatttacaaattacttttatgtcttcctactatactgactattgctctttcatattattattaaataactctttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA