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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTATGCAGAATCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTATATGGACTGGGAGAGTTGCCTCAGgtttctctatatctgtttcccttttaaacttagtaaacttcaggaactaactttggtttcttttatgtccttaag

Basic information

species Glycine max
transcript GLYMA07G30050.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30050.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G084440_T01 (Zea mays), 5'ss of exon 7
ATTTATGCAGAATCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTATATGGACTGGGAGAGTTGCCTCAGgtttctctatatctgtttcccttttaaacttagtaaacttcagga-actaactttggtttcttttatgtccttaag------------------------------------------------------------------------------------------------------
 | ||||||||||| || ||||||||||||||||| || |||||||| || || ||||| || ||||||||| | ||||||||     | ||    |     |  |||   || |||   | |  | | |||   |  |     | ||     |||                                                                                                       
CTCTATGCAGAATCACTCGCACGCTTTCAAGGAGGGTCCCCTTACATCTACCCTCTATACGGTCTGGGAGAGCTCCCTCAGgtaataatttaataataataataataataataataataataataataataataataataataataataataataataataataataataataataataataatactttttaggcttcgttattgtaaactgaaacgtcgatacgatgatgctttcttttatttgtcatgaaatcaaag

upper sequence: GLYMA07G30050.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0017g00490.t01 (Vitis vinifera), 5'ss of exon 6
ATTTATGCAGAATCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTATATGGACTGGGAGAGTTGCCTCAGgtttctctatatctgtttcccttt-taaacttagtaaacttcaggaactaactt----tggtttcttttatgtccttaag
 | |||||||| ||| | ||||||||||||||||| || || || || |||||| | |||||| |||| || ||||||||||||| | |  ||||||     | | || |  |||  | ||  |   | |  |||    |||||| | || |  |    ||
CTCTATGCAGAGTCCTTGGCACGCTTTCAAGGAGGATCTCCCTATATCTATCCAATGTATGGATTGGGGGAATTGCCTCAGgtttgttttcatctgtaattttgtgtatatgtagggagctatattgatttgcttcacatggtttttgttgttactggcag

upper sequence: GLYMA07G30050.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S20_16V6.1 (Physcomitrella patens), 5'ss of exon 7
ATTTATGCAGAATCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTATATGGACTGGGAGAGTTGCCTCAGgtttctctata-tctgtttcccttttaaacttagtaaacttcaggaactaacttt---------ggtttcttttatgtccttaag---------------
 | || ||||| ||  | || || ||||||||||| ||||||||||| |||||||| || || || || |||||||| ||||||    | || | || |||  |||| |   |  |     | || || |     |         | | | |    ||| | |                  
TTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTATCCACTCTACGGCCTCGGCGAGTTGCCACAGgttcgcgtttagtttgattcagtttttatgatgctgcctgttagtaagtgttccttacaggcaagatgtgtcgcctgttcctgtacaccgaaatatgttt

upper sequence: GLYMA07G30050.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ11673 (Selaginella moellendorffii), 5'ss of exon 7
ATTTATGCAGAATCCCTAGCACGCTTTCAAGGAGGTTCACCTTACATATATCCACTATATGGACTGGGAGAGTTGCCTCAGgtttctctatatctgtttcccttttaaacttagtaaacttcaggaactaactttggtttcttttatgtccttaag
 | ||||||||||| || || ||||||||||| ||||| ||||| || ||||| || |||||  |||||||  | |||||||||    | |      |      ||  |  ||||||||| | |   |                            
TTGTATGCAGAATCTCTGGCTCGCTTTCAAGGCGGTTCCCCTTATATTTATCCGCTCTATGGCTTGGGAGAACTTCCTCAGgttggcttttcctccctgtgtccttgga--tagtaaact-ctgctgcag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300573|gb|FG987940.1|FG987940
EST:     GAGGTTCACCTTACATATATCCACTATATGGACTGGGAGAGTTGCCTCAG                         GCATTTGCACGTCTGAGTGCTGTGTATGGTGGAACTTACATGCTGAACAAG
genomic: GAGGTTCACCTTACATATATCCACTATATGGACTGGGAGAGTTGCCTCAGgtttctctat ... tgtccttaagGCATTTGCACGTCTGAGTGCTGTGTATGGTGGAACTTACATGCTGAACAAG