Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGATTATGGATTGATCAATAACATTCACCATGACATTGGAACTCATGTCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtctctctaatctactatttgttttgaaacaatggatagtgattttacataagatgttgagtttgaatgtttcttttgcttctcttgcag

Basic information

species Glycine max
transcript GLYMA07G18350.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18350.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g18070.1 (Oryza sativa), 5'ss of exon 7
TCGTGATTATGGATTGATCAATAACATTCACCATGACATTGGAACTCATGTCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtctctctaatctactatttgttttgaaacaatggatagtgattttacataagatgttgagtttga-atgtttcttttg-cttctcttgcag
||| || || || | |||||| ||| | ||||||||||||||||| |||||||||||||| || || || ||||| ||||| || ||  | |||||||| || ||   |  ||       ||   ||||||     |||| ||    ||||| ||  |   |   | |  |  |||||  ||| | | |  |||||||
TCGGGACTACGGGTGGATCAACAACGTACACCATGACATTGGAACCCATGTCATTCATCATCTTTTCCCACAAATCCCACATTACCATCTTGTTGAGGCGgtaagaagccatccgccactcttgctgtttt-----aatgaatt---attttgcaagaatcgcctactaagttatgttggtttggacctaacttgcag

upper sequence: GLYMA07G18350.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G074401_T01 (Zea mays), 5'ss of exon 7
TCGTGATTATGGATTGATCAATAACATTCACCATGACATTGGAACTCATGTCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtctctctaat--ctactatttgttttgaaacaatggatagtgattttacataagatgttgagtttgaatgtttcttttgcttctcttgcag
 || || |||||| |||| || || || ||||||||||| |||||||||||||| |||||||| || |||||||| ||||| || ||  |  ||||||| || || || || |  ||   | |  ||| |||        |    |||   ||| | ||     |      ||        |||||  |  | |||||
CCGGGACTATGGACTGATTAACAATATCCACCATGACATCGGAACTCATGTCATCCATCACCTTTTCCCTCAAATCCCACATTACCATCTCATTGAGGCGgtaagagtttcccctattcttgccttttttttcttcttttttataagtttctttgcctagatcataagacctg-------tttttgaatgacctgcag

upper sequence: GLYMA07G18350.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G129209_T01 (Zea mays), 5'ss of exon 4
TCGTGATTATGGATTGATCAATAACATTCACCATGACATTGGAACTCATGTCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtctctctaatctactatttgttttgaaacaatggatagtgattttacataagatgttgagtttgaatgtttcttttgcttctcttgcag
 || || || || | |||||| ||||| |||||||||||||| ||||||||||| || || || || || || || |||||||| ||  |  | ||||| || |||  |     |||||   |||   |  |  |      |||     |      ||||||  |  | || |||                     
CCGGGACTACGGGTGGATCAACAACATCCACCATGACATTGGGACTCATGTCATCCACCATCTCTTCCCGCAGATCCCACACTACCATCTCATAGAGGCAgtaagtaacaactaaatct--cattcactacgctaatgcacatatcagatcactgaaagatggaggctgtgcatgcag------------------

upper sequence: GLYMA07G18350.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G128971_T03 (Zea mays), 5'ss of exon 3
TCGTGATTATGGATTGATCAATAACATTCACCATGACATTGGAACTCATGTCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtctctctaat--ctactatttgttttgaaacaatggatagtgattttacataagatgttgagtttgaatgtttcttttgcttctcttgcag
 || || || |||| |||||| ||||| || || ||||| |||||||||||||| |||||||| || ||||| || || || || ||  |  | ||||| || || || || |  |    | |  ||| | ||         |  |||   ||  | || |||  | ||      | ||| ||     |  | |||||
CCGGGACTACGGATGGATCAACAACATCCATCACGACATCGGAACTCATGTCATCCATCACCTCTTCCCTCAGATCCCGCATTACCATCTCATCGAGGCGgtaagggtttcccctactcttgccttttttcttttcttttcagcaagtttcttcgccta-gatcataagacctgcttttttttggatgtggcctgcag

upper sequence: GLYMA07G18350.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0105g00430.t01 (Vitis vinifera), 5'ss of exon 7
TCGTGATTATGGATTGATCAATAACATTCACCATGACATTGGAACTCATGTCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtctctctaatct--actatttgttttgaaacaatggatagtgattttacataagatgttgagtttga--atgtttcttttgcttctcttgcag
|||||| ||||||| ||| ||||||||||||||||| |||||||| ||||| ||||| || || ||||||||||| || |||||||||||  | || || |||||| |||||  |   |  | ||  || | |  || ||  |  ||  |  || ||||    | | | | | |  |  ||||   |      |||| ||
TCGTGACTATGGATGGATTAATAACATTCACCATGATATTGGAACACATGTGATTCACCATCTGTTTCCTCAAATCCCGCACTATCACTTGATAGAAGCGgtgagtatctctgaaggtttgaatagctgctctataa-aaccgtgagaaacattccatatagagctcattctaacaaaatttcccctctaaaccttgtag

upper sequence: GLYMA07G18350.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ23113 (Selaginella moellendorffii), 5'ss of exon 7
TCGTGATTATGGATTGATCAATAACATTCACCATGACATTGGAACTCATGTCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtctctctaatctactatttgttttgaaacaatggatagtgattttacataagatgttgagtttgaatgtttcttttgcttctcttgcag
 || || ||||||||| |||||||||||||||| ||||||||||| |||||| | |||||  | || || || ||||||||||| || ||  | || || || ||| |||||      ||  |   ||     | | ||  |   |  ||| | ||    |||  ||                             
CCGAGACTATGGATTGTTCAATAACATTCACCACGACATTGGAACGCATGTCGTGCATCATTTGTTCCCGCAGATTCCACACTACCATTTGATCGAAGCCgtaagtttctctgagtggtatcaagggtc----atcgattaacgttcttttcaaatttcctgtgtag-----------------------------

upper sequence: GLYMA07G18350.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ20170 (Selaginella moellendorffii), 5'ss of exon 7
TCGTGATTATGGATTGATCAATAACATTCACCATGACATTGGAACTCATGTCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtctctctaatctactatttgttttgaaacaatggatagtgattttacataagatgttgagtttgaatgtttcttttgcttctcttgcag
 || || ||||||||| |||||||||||||||| ||||||||||| |||||| | |||||  | || || |||||||||||||| || ||  | || || || ||| |||||      ||  |   ||     | | ||  |   |  ||| | ||    |||  ||                             
CCGAGACTATGGATTGTTCAATAACATTCACCACGACATTGGAACGCATGTCGTGCATCATTTGTTCCCGCAAATTCCACACTACCATTTGATCGAAGCCgtaagtttctctgagtagtatcaagggtc----atcgattaacgttcttttcaaatttcctgtgtag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15812764|gb|BI785039.1|BI785039
EST:     TCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCT                         ACTGAGGCAGCTAAGCCAGTGTTTGGAAAATATTATAGAGAACCAAAGAAA
genomic: TCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtct ... tctcttgcagACTGAGGCAGCTAAGCCAGTGTTTGGAAAATATTATAGAGAACCAAAGAAA
EST: gi|14125344|gb|BG789782.1|BG789782
EST:     TCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCT                         ACTGAGGCAGCTAAGCCAGTGTTTGGAAAATATTATAGAGAACCAAAGAAA
genomic: TCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtct ... tctcttgcagACTGAGGCAGCTAAGCCAGTGTTTGGAAAATATTATAGAGAACCAAAGAAA
EST: gi|23734327|gb|BU765389.1|BU765389
EST:     TCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCT                         ACTGAGGCAGCTAAGCCAGTGTTTGGAAAATATTATAGAGAACCAAAGAAA
genomic: TCATTCATCACCTATTTCCTCAAATTCCACACTATCACTTAGTTGAGGCTgtgagtgtct ... tctcttgcagACTGAGGCAGCTAAGCCAGTGTTTGGAAAATATTATAGAGAACCAAAGAAA