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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTAAGGGAGGAAGGATTTGCATCTTTCTATCGTGGCCTTGGGCCTTCTCTAATTGCAATAGCTCCTTATATTGCAGTGAACTTTTGTGTTTTTGACTTgtaagtttattaataatcttatatcttttaagtaaattgagagacactggatttggacattgaaattgaaacatcccgacttttatggatgacag

Basic information

species Glycine max
transcript GLYMA07G18140.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18140.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g16040.1 (Oryza sativa), 5'ss of exon 7
TGCTAAGGGAGGAAGGATTTGCATCTTTCTATCGTGGCCTTGGGCCTTCTCTAATTGCAATAGCTCCTTATATTGCAGTGAACTTTTGTGTTTTTGACTTgtaagtttattaataatcttatatcttttaagtaaattgagagacactggatttggacattgaaattgaaacatcccgacttttatggatgacag
|||| || || ||||| || || || |||||| | ||||| || || ||||| || | ||| || ||||| ||||| |||||||| |||||||||||||||| || || ||  ||       ||| | |||  || |||           |  | || ||| |  |   | | ||    ||||| || |||  ||
TGCTGAGAGACGAAGGTTTGGCCTCCTTCTATGGAGGCCTGGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTgtgagattctttctacctc---atcatataaaaaagttgg----tctcaaaagtagatattcacctc--accctctattcttttctgtatgtaag

upper sequence: GLYMA07G18140.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
TGCTAAGGGAGGAAGGATTTGCATCTTTCTATCGTGGCCTTGGGCCTTCTCTAATTGCAATAGCTCCTTATATTGCAGTGAACTTTTGTGTTTTTGACTTgtaagtttattaataatcttatatctttta-agtaaattgagagacactg-gatttggacat-tgaaattgaaacatcc-cgacttttatggatga-cag
| ||||| ||||||||| ||||||| ||||||   || ||||| ||||||||  ||| |||||| ||||| ||||| ||||||||||| |||||||| |||| || ||  |     ||  ||  |  ||| ||   | |||| || |     |   | | || |  |  ||| ||||      ||| ||||| | | |||
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctc---ttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag