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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtatggaccttttctcattttttcatatgctcaagttttggtaataatgacatttcatcttattcttaaacatttgtcatacag

Basic information

species Glycine max
transcript GLYMA07G17680.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G17680.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 5'ss of exon 7
CTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtatg-gaccttttct-cattttttcatatgctca-agttttggt--aataatg--acatttcatcttattcttaaa-catttgtcatacag------------------------------------------------------------------------
| || ||||| || ||||||||||||||||||||||| ||||  |||||||||   | |||     | ||||||||   ||| |||| |||||  | ||  |||    |   |    |  |   |||   | |  |||  ||  | ||| |  ||  || ||    ||||  | ||  ||                                                                        
CCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACgtatgtaatctcctctgtgctcagttgcctttttgcagtacagatgcaatggtgctaaattgctactggttgttgcctcattcattatgtagagaatattttgaaatgagcaattatattccctgtctaacagcatgcttatactttcccttttcctctatcag

upper sequence: GLYMA07G17680.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 5'ss of exon 8
CTAACAAGATTCGTCTTTGGAACAAGGGTGTTGATTCTGAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtatggaccttttctcattttttcatatgctcaagttttggtaataatgacattt---catcttattcttaaacatttgtcatacag-
| || |   |||| ||||||||||| ||||||||||||||||  |||||||| ||||  ||    |||||||||||  | | | | |||| ||  |  |||||    | |||| ||       | |    || |||      |    | |||||| |      | | || |     
CAAATAGAGTTCGGCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCTAAATTTCGGAAGCATGAAATGCGCATTAAATTGAGgtttgacctatttctttaatattca-atagcagtatgtgaaaaaaaattgtgcatagctaacttattttcctttttctctcttgttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208179722|gb|GD973641.1|GD973641
EST:     GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAG                         CAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtatggacct ... tgtcatacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGT
EST: gi|193701460|gb|FK638219.1|FK638219
EST:     GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAG                         CAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGT
genomic: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtatggacct ... tgtcatacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGT
EST: gi|7590070|gb|AW705831.1|AW705831
EST:     GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAG                         CAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAAATTCCATCCCAAATACCGCTCCCATGAAATGCGATTAAGACTAAGgtatggacct ... tgtcatacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGT