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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGACGAACTTGGATTGATTCACCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggctactttctcttgccatcaaatgttctctagtaacttactacttcttgctcagtacttctgttatatattatcaaacttaaagatttttgcttttgcag

Basic information

species Glycine max
transcript GLYMA07G15930.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 7
TTGGACGAACTTGGATTGATTCACCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggc--tactttctcttgccatcaaatgt--tctctag---taacttactacttcttgctcagtacttctgttatatattatcaaacttaaagatttttgcttttgcag
|||| || |||||| ||||||| || ||||||||| |  ||||||| ||||| || || |||||||| ||||| |  || || ||||||||||||||||||||||     |||    ||  |  || | ||   |||  ||   | | ||| || || |   |   |  |||  |  | |   |   |  || ||  ||             
TTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGGgtatgataacactaatcctgactgtctactgcaatcttcagccttgaattaata-ttgtaattttatgtttccttcgttttagaattacattgaatgttcc-----------

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 7
TTGGACGAACTTGGATTGATTCACCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggctactttctcttgccatcaaatgttctctagtaacttactacttcttgctcagtacttctgttatatattatcaaacttaaagatt--tttgcttttgcag--
|||| || |||||| ||||||| || ||||||||| || |||| || ||||| || || |||||||| ||||| ||||| || ||||| ||||||||||||||||           | |||||||| | |  ||| | |  ||  |     |||     | ||  ||  | ||  |       || |  | |   ||||||||      
TTGGGCGCACTTGGGTTGATTCTCCTGGAGAGATGGTCATGACGAACCTGACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgata-------ttggccatcaatt-tattcttgca-tttcttgtccgttgacagctcctgttgccaaattattcagtttttcagtagtaacttgcttttatgcat

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 7
TTGGACGAACTTGGATTGATTCACCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatgg-----------ctactttctcttgccatca--aatgttctctagtaacttactactt-cttgctcagtacttctgttatatattatcaa--acttaaagatttttgc--ttttgcag-----------------------------------
|||| || |||||| ||||||| || ||||||||| |  ||||||| ||||| || || |||||||  ||| | ||||| || |||||||||||||| |||||||            | | ||  ||||||  |     |  || ||   |    |||||  |  ||||| | || ||     |    ||  ||   | | ||   |||||    | ||  ||                                   
TTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTTATGACAAACCTGACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatttggccatcaatttattcttgcatttgttgactttttcagtttcagtactatatatttgcttactatttgctggaagcgttggcagttattcaattctttttattgtcttatagttcgctcagtccggtttgtattgcttacatttcag

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g00480.t01 (Vitis vinifera), 5'ss of exon 7
TTGGACGAACTTGGATTGATTCACCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggctactttctcttgccatcaaatgttctctagtaacttactacttcttgctcagtacttctgttatatattatcaaacttaaagatttttgcttttgcag
||||||| |||||| ||||||||||||| ||||||||| |||||||  |||| || ||||||||||| ||  | ||||||||||||||||||||||| ||||||||     || | ||         ||||   |  |   |  ||| | | ||  ||       ||   |  |||    |     |  || |||  | | ||  
TTGGACGTACTTGGGTTGATTCACCAGGGGAGATGATCATGACAAACTTGACCACTGGGGACAAAGTCGTATTATATTTTCAACCATGTGGCTGGTTCGGgtatgggcttcttttatttttggtgg-tgttaattgctg--tggctagtgcatgagcaaattacatgcctttcattcctgatgggcacaatcttttttgtggc--

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 7
lower sequence: PP1S20_97V6.1 (Physcomitrella patens), 5'ss of exon 7
TTGGACGAACTTGGATTGATTCACCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgta--tggctactttctc-ttgccatcaaatgttctctagtaacttactacttc--ttgctcagtacttctgttatat-attatcaaacttaaagatttttgcttttgcag-----------------------------------------------------------
|||||||||||||| | ||||| ||||| || ||| || |||||||||| || |||||||| ||||| ||||| || ||||| ||||||   ||||| |||||  || || | |   |    || || ||   | | |  |  ||||  | |||  |||        | |     |   | | |  |        |  | |  || |||||                                                           
TTGGACGAACTTGGGTAGATTCCCCAGGCGACATGGTCATGACAAATCTCACAACAGGGGAGAAAGTTGTGCTTTACTTTCATCCATGTAATTGGTTCGGgtaattgtcttcgtcgccaccaccctcgaagcgttttttttcccttatcatttcatttgtgtttcgatgcaacagtgcgactctttagtgcggtcaaatgtagttctgcagcatgtctctaaacatgctcctttttcttcaatgcgtaatgctcccggtccttaatgcag

upper sequence: GLYMA07G15930.3 (Glycine max), 5'ss of exon 7
lower sequence: EFJ08612 (Selaginella moellendorffii), 5'ss of exon 7
TTGGACGAACTTGGATTGATTCACCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggctactttctcttgccatcaaatgttctctagtaacttactactt-cttgctcagtacttctgttatatattatcaaacttaaagatttttgcttttgcag
||||  |||| ||||| || || || |||||     |  |||||||||| || || || ||||||||| | || ||||||||||| |||||||||||||||||     |   ||| |     |   |||| |  ||||| ||||||  ||  ||||  ||                                              
TTGGCAGAACGTGGATAGACTCTCCCGGAGATTATGTTGTGACAAATCTCACGACTGGCGACAAAGTGATCCTTTATTTTCAACCCTGTGGCTGGTTTGGgtaaaatcagagtctttc----tttgatgtgcg-tagta-cttactgtttgtttgcaaag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727396|gb|BU761727.1|BU761727
EST:     ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGG                         AGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC
genomic: ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggctac ... gcttttgcagAGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC
EST: gi|9820741|gb|BE556251.1|BE556251
EST:     ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGG                         AGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC
genomic: ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggctac ... gcttttgcagAGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC
EST: gi|7284099|gb|AW596698.1|AW596698
EST:     ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGG                         AGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC
genomic: ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggctac ... gcttttgcagAGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC
EST: gi|254327936|gb|GR834901.1|GR834901
EST:     ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGG                         AGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC
genomic: ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggctac ... gcttttgcagAGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC
EST: gi|254332080|gb|GR846283.1|GR846283
EST:     ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGG                         AGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC
genomic: ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGTGGCTGGTTTGGgtatggctac ... gcttttgcagAGCTGGTAGATATGAAGTGGATGGGTACGTGTATAATTCTGCTGACGAGCC