Sequence
atgc intronic sequence ATGC exonic sequenceGTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataatttatcagacttgtgggtttaggaatgtaaattaactgtttaccaacattattttgatatttatgatccgtgaaactaattgcattagagtagcaattaattaatgattcaccctgattatccatacag
Basic information
species | Glycine max |
transcript | GLYMA07G15170.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g44922.2 (Oryza sativa), 5'ss of exon 7
GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgta-tctataatt-tatcagacttgtgggtttaggaatgtaaattaactgtttaccaacattattttgatatttatgatccgtgaaactaattgcattagagtag--------caattaattaatgattcacc-----ctgattatccatacag---------
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GTCTATATCATTGGAGGAGATGGAACACAGAAGGGTGCATATGAGATCTTCAAGgtaatttaccactgtggtacaaccgtacaagt-gctatgtatgctgtttgctga--aagaatgtgataatagatcctattcatcaatgca-ttgcagtagcatacggtatatctatttaaatattattttatcgttacctcattgttttcatattggtggcag
upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G004932_T01 (Zea mays), 5'ss of exon 7
GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataatttatcagacttgtgggtttaggaatgtaaattaactgtttaccaacattattttgatatttatgatccgtgaaactaattgcattagagtagcaattaattaatgattcaccctgattatccatacag
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GTGTATATCATTGGAGGAGATGGAACTCAGAAGGGAGCATATGAGATCTTCAAGgtagttatcactggtcatgcg---gtcctcatgacatttggtttcctgtata--aaaattagaagaatagggaccctctgtaaaa----tagcattgtagtaataagaa------------------------------
upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G879882_T03 (Zea mays), 5'ss of exon 7
GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctata---atttatcagacttgtg-ggtttaggaatgtaaattaactgtttaccaacattattttgatatttatgatccgtgaaactaattgcattagagtagcaattaattaatgattcaccctgattatccatacag
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GTGTTCATTATAGGAGGAGATGGAACTCAGAAGGGTGCATATGAGATTTACAAGgtattctcatgagtatgtctgccatacgtggttcagaacttcagat--actgtcaaaccacatcatttgcgcatttctgtgatgtctgttcaagtgcattca-----------------------------------------
upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 7
GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataatt------------tatca-gacttgtgggtttaggaatgtaaattaactgtttaccaa---cattattttgatatttatgatccgtgaaactaattgcattagagtagcaattaatt------aatgattcaccctgatt-atccatacag---------------------
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GTTTACATAATTGGAGGTGATGGAACTCAAAAAGGGGCATCTGTGATTTTTGAGgtaattttatttgtaaaactggaatatcgtaagtcatagtttgagaaatgctgcatataaatttaccagttcctttttctctgttctcagaaatcctgctgtttgtgacatttcctaagctatttttgggctaaaatgatatgctgtagctgaaccctattgaactgattgttaattgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7591258|gb|AW706995.1|AW706995EST: ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAG GAAGTCAGAAGGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
genomic: ATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataa ... atccatacagGAAGTCAGAAGGCGTGGTCTCAAAGTTTCAGTTGTAGGTATCCCCAAAACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTTGAGgtatctataatttatcagacttgtgggtttaggaatgtaaattaactgtttaccaacattattttgatatttatgatccgtgaaactaattgcattagagtagcaattaattaatgattcaccctgattatccatacag
- - - - - TTGGAG
- - - - - TGGAGG
- - - - - - GGAGGA
- - - - - - GAGGAG
- - - - - - - AGGAGA
- - - - - - - GGAGAT
- - - - - - - - GAGATG
- - - - - - - - - GATGGA