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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttctcataaagttcgatgaagttttatttattttcttttataattacaatacagcttttttcttcttattattctaatctcacttgcattgaatgttatatggttaatattattattag

Basic information

species Glycine max
transcript GLYMA07G09180.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312217|gb|BG405798.1|BG405798
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|120493761|gb|EH221928.1|EH221928
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGNCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|120493651|gb|EH221818.1|EH221818
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|7685006|gb|AW755654.1|AW755654
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|14991482|gb|BI317155.1|BI317155
EST:     CTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|19348059|gb|BM892591.1|BM892591
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCANAGAAGGGGCTGAGGAGTAGA
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGA
EST: gi|192312979|gb|FK004625.1|FK004625
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|16345287|gb|BI970882.1|BI970882
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|31464669|gb|CD406682.1|CD406682
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|4287805|gb|AI441242.1|AI441242
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCT
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCT
EST: gi|31461405|gb|CD403433.1|CD403433
EST:     AAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: AAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|23053843|gb|BU577597.1|BU577597
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|192312980|gb|FK004626.1|FK004626
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|31463138|gb|CD405166.1|CD405166
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|21677113|gb|BQ629464.1|BQ629464
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|192301763|gb|FG997663.1|FG997663
EST:     GAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: GAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|192301762|gb|FG997662.1|FG997662
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
EST: gi|19348345|gb|BM892877.1|BM892877
EST:     CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG                         GATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG
genomic: CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttc ... ttattattagGATACTCAAGAAGAACCAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGgtaattgttctcataaagttcgatgaagttttatttattttcttttataattacaatacagcttttttcttcttattattctaatctcacttgcattgaatgttatatggttaatattattattag

- GCTGGA
- - - - - - - - - TTGAAG
- - - - - - - - -  TGAAGA
- - - - - - - - - -  AAGAGG
- - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - -  TGGAGA