Sequence
atgc intronic sequence ATGC exonic sequenceATGTATCCTTTGCTGGAGAGGATAAGTCCAAGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggtttcttgactggtgtattttccttttgagtttttctttcatggtattcttgaaatagtttgttgagattgagtatagtcttaatatgaaatggtt...
Basic information
species | Glycine max |
transcript | GLYMA07G07300.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G07300.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g02400.t01 (Vitis vinifera), 5'ss of exon 6
ATGTATCCTTTGCTGGAGAGGATAAGTCCAAGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtagg-tttcttgactggtgtattttccttttgagtttttctttcatggtattcttgaaa--tagtttgttgagattgagtata--gtcttaatatgaaatggtt
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ATGTACCCAATGCTGGAAAGGATAAGCCCACGAACCAGAAAGCTGGAATTGTTTGCTCGGATGCATAACACTCATGCAGGgtatgctttcttaaccgaca-gtagtgctttttatttttttattctttcccttctgaaaaccttgtttctcttcatctgttttattattttatttataaat----
upper sequence: GLYMA07G07300.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S249_97V6.1 (Physcomitrella patens), 5'ss of exon 7
ATGTATCCTTTGCTGGAGAGGATAAGTCCAAGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggtttcttgactggtgtattttccttttgagtttttctttcatggtattcttgaaatagtttgttgagattgagtatagtctta-atatgaaatggtt--
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ATGTATCCTTTGTTGGAAAGAATAAGCCCAAGAACACGAAAACTGGAGTTATTTGCCCGAATGCACAACACTCATGCAGGgtatgttgcatattt--tctatctaacgtgtatttgtttcttgattgcttcttttgaaa-acaatattgtttttatatttagattaatgaatgaattaatgaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9564292|gb|BE473801.1|BE473801EST: AGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGG ATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGANGG
genomic: AGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggtttct ... tttgcatcagATGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTGGTGGATGAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTATCCTTTGCTGGAGAGGATAAGTCCAAGAACAAGAAAGCTAGAACTATTTGCTCGCATGCACAATACTCATGCAGGgtaggtttcttgactggtgtattttccttttgagtttttctttcatggtattcttgaaatagtttgttgagattgagtatagtcttaatatgaaatggtt
- - - - - - - - - - - - - - - - - AAGAAA