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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTTCTTGAAGAACAGTCTTTTCCAGAGATTTTGATCAAAGCCATGTCCTTTGAGAAACCAATTATTGCACCTGATGTTCCCATGATCAGAAAATATgtatgtttgcactctagtttttttttttttttactttaaccttattgtgggtctatattgcttgtggttacttttatcaatcttgagtttgaattctcct...

Basic information

species Glycine max
transcript GLYMA07G06780.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06780.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCCTTTCTTGAAGAACAGTCTTTTCCAGAGATTTTGATCAAAGCCATGTCCTTTGAGAAACCAATTATTGCACCTGATGTTCCCATGATCAGAAAATATgtatgtttgcactctagtttttttttttttttactttaaccttattgtgg-gtctatattgcttgtggttacttttatcaatcttgagtttgaattctcct----
||| |||||||| || |||||||||||||| |||||||| || ||||||||||| | |||||| ||  ||||||| ||  |   ||  || |||||||||||||| |  |  |||    ||   | |   ||     ||   | |||| |  | |    ||    |  | ||||| |   |   ||  |||| | | |       
ATCATTTCTTGAGGAGCAGTCTTTTCCAGAAATTTTGATGAAGGCCATGTCCTTGGGGAAACCTATAGTTGCACCAGACCTCTTCAACATTAGAAAATATgtatgct--ccttcttcccttgcatgtggcttgacggaaatgtgttgttgcatgttctctgtccatt-tgactttcactgac--tgtatttgcaatattaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058639|gb|CA801553.1|CA801553
EST:     CCTTTGAGAAACCAATTATTGCACCTGATGTTCCCATGATCAGAAAATAT                         GTTGATGACAGGGTGAATGGCTATCTTTTCCCAAAGGATAATATTAGAGTT
genomic: CCTTTGAGAAACCAATTATTGCACCTGATGTTCCCATGATCAGAAAATATgtatgtttgc ... tattaattagGTTGATGACAGGGTGAATGGCTATCTTTTCCCAAAGGATAATATTAGAGTT