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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTAAGAAGTGATTTTCCTGGCAGCTCAGGTAATCAAGCAAGTGAAGCAACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcagtgttttcttgacttctttagttcttaaaatgatatctaacaaaaccagatgccatacaatatttcctctgaccatcaaagaaacaaattt...

Basic information

species Glycine max
transcript GLYMA07G05530.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344404|gb|GR855382.1|GR855382
EST:     ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
genomic: ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
EST: gi|17021964|gb|BM092998.1|BM092998
EST:     ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTA
genomic: ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTA
EST: gi|208050092|gb|GD849403.1|GD849403
EST:     TTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
genomic: TTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
EST: gi|19271317|gb|BM887573.1|BM887573
EST:     ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
genomic: ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
EST: gi|151398241|gb|EV268119.1|EV268119
EST:     ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
genomic: ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
EST: gi|151400196|gb|EV270010.1|EV270010
EST:     ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
genomic: ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
EST: gi|15815123|gb|BI787398.1|BI787398
EST:     ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
genomic: ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
EST: gi|20498506|gb|BQ273436.1|BQ273436
EST:     ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
genomic: ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
EST: gi|20498782|gb|BQ273712.1|BQ273712
EST:     ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
genomic: ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATCGATTAC
EST: gi|208110058|gb|GD906306.1|GD906306
EST:     ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTG                         GTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATC
genomic: ACTGAGGAATCTCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGgtgagttcag ... ctatatgcagGTATAGTAATAGTAAATTGTTGCAGCCTCATTTTTCAACACCATC