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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTAATATATTGATCAGACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatttgttttttaactctagtttctagttgaaattggcttctagagacacactttatggccaataag...

Basic information

species Glycine max
transcript GLYMA07G05390.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05390.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g59040.3 (Oryza sativa), 5'ss of exon 7
-TCTTAATATATTGATCAGACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatt-tgttttttaactctagtttctagttgaaattggcttctagagac----acactttatggccaataag-----------------------------
 |   ||||| ||  | ||||||||||||||||||||||||||| || ||| |||  ||  | |||||   ||||||   |||  |||| |||||||| |||| |||      || |  |  |||     |||  ||       | | | | |   |  |   || ||| ||  |  ||| ||    |  | || ||||  |||                               
TTAACAATATGTTT-TTAGACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCATgtaagttctctgttctgcagtgaaatataagtccataacaagatgtgattgtgtgtgttg--tggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcag

upper sequence: GLYMA07G05390.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 8
TCTTAATATATTGATCAGACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatt-tgttttttaactctagtttctagttgaaattggcttctagagac----acactttatggccaataag-----------------------------
                  ||||||||||||||||||||||||| || ||| |||  ||  | |||||   ||||||   |||  |||| |||||||| |||| |||      || |  |  |||     |||  ||       | | | | |   |  |   || ||| ||  |  ||| ||    |  | || ||||  |||                               
------------------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCATgtaagttctctgttctgcagtgaaatataagtccataacaagatgtgattgtgtgtgttg--tggaataggtatgaagataccactattccttttggcatatattgacacatatttttgtttatttaatctcag

upper sequence: GLYMA07G05390.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g36260.1 (Oryza sativa), 5'ss of exon 6
TCTTAATATATTGATCAGACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatttgttttttaactctagtttctagttgaaattggct--tctagagacacactttatggccaataag
                  ||||||||||||||||||||||||| || || ||||| ||  | |||||  | || ||   |||| | ||||||||||| |||| |||  ||||  || | |  | ||   |   | |   | ||   |   | | ||   |||||  || | |  || |          ||||   ||     
------------------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCTTGCCTGCTCCGACAGCTCGTGAAGCAATCCAGTACTCTATgtaagt-cctaaacattt-tgcagcattga---tgtgcatattaccatgttggatt---gttgatgttcgatgatccaatttgttgtcttattttcag----

upper sequence: GLYMA07G05390.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G01480.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTAATATATTGATCAGACAAGAAGAATGAGAACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCATCCACTGCCGTTGAATCCATCCAGTACTCAATgtcagtgtctaattatctatagaacacctagtttatttgttttttaactctagtttctagttgaaattggcttctagagacacactttatggccaataag
                  |||||||||||||||||||||| || ||||| |||||||||||||   |     ||||  ||||| |||| ||||||||||||| |   | |  || | | ||       ||  | ||||| ||||         |||  ||   |  |||   | |  |  ||   || |  |        
------------------ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAATGATTTTCTACAACCTGGTCCTGCTATTGAAGCCATTCAGTACTCAATgtaaacttttttttctttttaccttttttacataatttgcttttc--------ttttaagcaaatcttgatgtttgaaatca---ttcacag--------