Sequence
atgc intronic sequence ATGC exonic sequenceGGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaaatgcacaagactcgtcctctagcttttttttatcattgtttccatgaaaataaatcatttgactaaaattttctcatttttag
Basic information
species | Glycine max |
transcript | GLYMA07G05220.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaaatgcacaagact-cgtcctctagcttttttttatca-ttgtttcca-tgaaaataaatc-atttgactaaaat-tttctcatttttag------------------
||| ||| | || |||||||||||||| | || ||||| |||||| ||||||| |||||||||||||| ||||| ||||||| || ||| ||||||||||| || ||| | | | || | |||||| || | | || | ||| | || |||||| | || ||||| | |
GGCCAATCGTACAGATGCTTGTTTTATCCGTGTAATTGGCAGTGAGTTAGTTCAAAAATATGTTGGTGAAGGGGCACGGATGGTCCGGGAATTATTTCAGgta---tgtgcaacattgtgaaaactcacaagaacttatcaattttctgcacttaaagtgcttctgtttgacaagcatgtttctgaaaaaaaaaatgttgacttggtttag
upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G110185_T01 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaaatgcacaagactcgtcctctagcttttttttatcattgtttccatgaaaataaatca-----tttgactaaaattttctcatttttag
|| || |||||||||||||||| || | || ||||||||||||||||||||||| |||||||| || || ||| ||||||| | ||||| || |||||| | | | | | || || | || ||| | || | | | | | | ||| ||| | | ||| |
AGCAAACCGGACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGCTAGTTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGgtata-tctagggctgtgaatccgtaaaaggttcatccagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtag-
upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G110185_T03 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaaatgcacaagactcgtcctctagcttttttttatcattgtttccatgaaaataaatca-----tttgactaaaattttctcatttttag
|||||||||||||| || | || ||||||||||||||||||||||| |||||||| || || ||| ||||||| | ||||| || |||||| | | | | | || || | || ||| | || | | | | | | ||| ||| | | ||| |
----------ACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGCTAGTTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATA-TCTAGggctgtgaatccgtaaaaggttcatccagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtag-
upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaaatgcacaagactcgtcctctagcttttttttatcattgtttccatgaaaataaat----catttgactaaaattttctcatttttag---
|| ||| |||||||||||||||| || | || |||||||||||| |||||||||| ||||| || || || ||| ||||||| | ||||| || |||||| | | | | || ||| | || | || | ||| |||| | | | ||| | || |||| || | | | |
AGCAAATCGGACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGTTAGTTCAGAAGTATGTCGGCGAAGGTGCTCGGATGGTCAGGGAACTTTTCCAGgta---tatatatggctgtgaatctgtaaatattatcccagtcttttcatgtacgtgtgttcaacatatttctgaaatgaattcttctatggtag
upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgt---aaaatgcacaagactcgtcctctagcttttttt-tatcattgtttccatgaa--aataaatcatttgactaaaattttctcatttt-tag
|||||| || |||||||| |||||||| | |||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||| | | | | ||| ||| | | |||||| | || || | |||| | || | | | ||
GGCTAACAGAACTGATGCATGTTTTATTCGTGTTATTGGAAGTGAACTTGTTCAGAAATACGTTGGCGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtcacaagctgccacatgtttacagtttgtcttcatttattttattgttcttgatcattgctatattgtccgactgctacctttttttgctgcag
upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaaatgcacaagactcgtcctctagcttttt--tttatcattgtttccat---gaaaata------aatcatttgactaaaattttctcatttttag-
|| |||||||| |||||||| || || | |||||||| |||||||| |||||||||||||| || ||||| ||| ||||||| ||||| || || |||| || | | || | | | ||| || |||| || || | || | ||||| | || || | | | |
TGCCAATAGGACAGATGCTTGCTTCATTCGTGTTATTGGCAGTGAGCTTGTTCAGAAATATGTAGGAGAGGGTGCTCGGATGGTCCGTGAGCTTTTCCAGgcaagtcaatcgttaatcacttcacatccctgaggtttgatatggtttggatttagagactatcctttagtcattcgcctggaacctgtatactcacatc
upper sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaaatgcacaagactcgtcctctagcttttt--tttatcattgtttc-catgaaaataaatc--------atttgactaaaa--ttttctcatttttag
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TGCAAATAGGACAGATGCATGCTTCATTCGTGTTATTGGCAGTGAGCTTGTTCAGAAATATGTAGGAGAGGGAGCTCGCATGGTTCGTGAGCTTTTTCAGgtaagatacatggtgatctctccgcatctttcagatttaagatgggttggcgttaaagaggattccaagagaatttgccagaaaagctacgccaagcgta-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16346898|gb|BI972493.1|BI972493EST: TTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAG ATGGCTCGTTCAAAGAAGGCATGCATTGTGNTTTTTGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaaatgca ... tcatttttagATGGCTCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtaaaatgcacaagactcgtcctctagcttttttttatcattgtttccatgaaaataaatcatttgactaaaattttctcatttttag
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