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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagttttagttatgaagttcttttatttatacactttactatgttttgttttttactgttttatttaccctttgacttttgcatgaggaattgatatctgtgaataacagtaaatgtggattattattgctttatagctttatactaatgttttcaattttttgaatgcag

Basic information

species Glycine max
transcript GLYMA07G05170.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G50430.2 (Arabidopsis thaliana), 5'ss of exon 7
TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagttttagttatgaagttcttttatttatacactttactatgttttgttttttactgttttatttaccctttgacttttgcatgaggaattgatatctgtgaataacagtaaatgtggattattattgctttatagctttatactaatgttttcaattttttgaatgcag
||||||||||||| |||||||| |||||||| || |||||||         | || | ||| || | || |            | | ||||    || |||   |   |   |    | ||   ||   |||  ||||  | ||  ||||   |||                                                             
TTCATCCAGAAAGCTGGAATCCAATGTGGTCAGTGTCAAGgta--------taagatctgatgtacattcaa-----------attgtgttcaagttattaaaataa-acagagtaatggatccttatttgaccaatttgtttccctgaacg-cag-------------------------------------------------------------

upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G17280.1 (Arabidopsis thaliana), 5'ss of exon 7
TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgt-cagaaagttt---tagttatgaagttcttttatttatacactttactatgttttgttttttactgttttatttaccctttgacttttgcatgaggaattgatatctgtgaataacagtaaatgtggattattattgctttatagctttatactaatgttttcaattttttgaatgcag
||||||||||||| |||||||| |||||||||||||||||||  |||   |||   || || || |        ||  ||| ||      ||       |||||  |  |  ||  |                                                                                                        
TTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAGgtatagattctttctttacttttggaagatgacaatcgatatacccgttgataaccaacttttt-ttcatgaatgcag-------------------------------------------------------------------------------------------------------

upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 5'ss of exon 8
TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagttttagttatgaagttcttttatttatacactt-tactatgttttgttttttactgttttatttaccctttgacttttgcatgaggaattgatatctgtgaataacagtaaatgtggattattattgctttatagctttatactaatgttttcaattttttgaatgcag
||||||||||||| ||||| || ||||||||||||||||||| ||| ||    ||  | ||  ||||| ||     |||||| |  |||||| | |||| |  | ||| || || |||||    ||    | |     |  ||| |   ||  ||||                                                             
TTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAGgtaagacag----agccaagat-ttcttatacacg-acacttgttttatgttatcttttctgttatttaatatagccttt----ttgaactaacatggttgtatgttacaaatacag-------------------------------------------------------------

upper sequence: GLYMA07G05170.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S366_17V6.1 (Physcomitrella patens), 5'ss of exon 6
TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgt-----cagaaagttttagttatgaagttcttttatttatacactttactatgttttgttttttactgttttatttaccctttgacttttgc---atgaggaattgatatctgtg-aataacagtaaatgtggattattattgct-ttatagctttatactaatgttttcaatttt-ttgaatgcag
|||||||||| | ||||||||| ||||||||||| |||||||          | ||||| |      ||| | ||  | ||    ||| ||          |||||||   ||||      |    || ||||    |  |  ||| || | | |  || | |  |  ||||   ||   |||    | || |     |   |||    |  ||  | ||  ||||||
TTCATCCAGAGACTTGGAATCCAATGTGGTCTGTTTCAAGgtatttttgttcacttttattatctctgttgtctttctaatgagttttgcttctggactgattttactacattatgagatttcactctcttgccttgtacgttattaatgtttttccaacagcttttgatgttcttttggattctcatcattgtcaacttacaatacgattgatcctgtttgatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669207|gb|BE190314.1|BE190314
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|193367615|gb|FK332077.1|FK332077
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATAAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|208189947|gb|GD990021.1|GD990021
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTC
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTC
EST: gi|193362954|gb|FK327934.1|FK327934
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATAAAG                         CATAATTAACAGG-CTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATA-TTAACAGGGCTTCTTTCATTCATG
EST: gi|120495095|gb|EH223262.1|EH223262
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|208045851|gb|GD847707.1|GD847707
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|208275347|gb|GE075615.1|GE075615
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|9902562|gb|BE611593.1|BE611593
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|7692130|gb|AW760244.1|AW760244
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|120491908|gb|EH220075.1|EH220075
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG
EST: gi|192331929|gb|FK026713.1|FK026713
EST:     TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG                         CATATTAACAGGGCTTCTTTCATTCATG
genomic: TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGgtcagaaagt ... ttgaatgcagCATATTAACAGGGCTTCTTTCATTCATG