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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag

Basic information

species Glycine max
transcript GLYMA07G03890.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtt--tcctatatttgtatatggatag-gaattattatgccgataaaacctttgaatcag
 ||| | ||||  |||||||| || ||||| |||||||| ||||| || |||||||||| ||| ||| | || ||||||||||||||   |||||| ||||||| |||| | | | |  ||||      | ||  |  || | | | ||     |||||   | || |    || | |||  |                          
CACACTCGATGGACATCAAAAGGGTGTGAACTGTGTTGACTACTTCACTGGTGGTGACAGGCCCTATTTGATCACTGGTTCTGATGACTCCACTGCAAAGgttttttttttctatccacttttgagtgttccaagtatccacgattctgtgcagtcctaagatggtgtggtcatggtgaaccag-------------------------

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag
 ||||| ||||  |||  |||||| || |||||||||||||||||||| ||||||||    || ||  |||| || || ||||||||||| || || ||||| ||   |||    |   || | |  |    || ||     |  ||  |   |   |  ||| ||  |                                     
CACATTAGATGGCCATTCAAAAGGTGTCAATTGTGTTGATTACTTTACTGGTGGTGATCGCCCATACTTAATTACAGGCTCTGATGATCAGACCGCGAAGgtatgccatctgcagtgaattatcttgtgagtatattggacattgttacgagacacttcgttgaatcag-------------------------------------

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttg---ttttctattttctgttttttcctcttc-atcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag
 ||||||||||  |||  |||||| || ||||||||||||||||| || |||||||||  ||| |||||||| || || |||||||| || ||||| ||||| ||   | |||  ||     | |   | | ||  |  ||    || ||| | |  | |  ||| |                                           
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatgttcatttgcacatatgagcattttggacattatgactgattggttaacttgaattag-------------------------------------------

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G141587_T01 (Zea mays), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttct-attttctgttttttcctctt--catcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag
 ||| | ||||  |||   ||||| ||||| |||||||||||||| || |||||||||   || ||  |||| ||||| ||||||||||| ||||| |||||||||  | | ||   |||  || | ||| |    || | | |  | | ||  |    | |||  |      ||  |                               
CACACTAGATGGCCATTCGAAAGGTGTGAACTGTGTTGATTACTTCACTGGTGGTGACCGACCATACTTAATTACTGGCTCTGATGATCAGACTGCAAAGgtttgtcatatgatgcactgaattgtactcctgtggtcatgcatgcactctg--tgatgacattattggtcaaatcag-------------------------------

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G124886_T04 (Zea mays), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag
 ||| | ||||  |||   ||||| ||||| |||||||||||||| || ||||||||    || || ||||| ||||| ||||||||||| ||||| |||||||||  |      |   || |   |   | ||| |  || || | ||    |  ||     ||| ||   |  ||| |                          
CACACTAGATGGCCATTCCAAAGGTGTGAACTGTGTTGATTACTTCACTGGTGGTGATCGACCATACCTAATTACTGGCTCTGATGATCAGACTGCAAAGgtttgtcataagcactgaattgtactcctgtgatcatgtctgtactctgtacactgatgacattat-tgatca--aatcag-------------------------

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 6
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag
 ||| | ||||  |||||||| || || ||||||||||| ||||| || |||||||||| ||| ||| | || ||||||||||||||   |||||| |||||   |||| | |  |  | | | |  |||  || ||         ||| |   ||||    ||||   ||| |    | ||||| | |   |             
CACACTTGATGGACATCAAAAGGGTGTCAATTGTGTTGACTACTTCACTGGTGGTGACAGGCCCTATTTGATTACTGGTTCTGATGACTCCACTGCAAAGgtacatttt-tgtactgaggtgtatgttctgaatttt---------ttgttgctctatgca-gtattatgatggtgcgttttatggcaaagtag------------

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G000645_T03 (Zea mays), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag
 ||| | |||| ||||||||| || || || |||||||| ||||| || |||||||||| ||| ||| | || ||||||||||||||   ||| || |||||    ||| | |  || | | | |  | |   | ||     | |||  |||   |  | |  ||    | | |      ||||| | | | |             
CACACTTGATGGGCATCAAAAGGGTGTCAACTGTGTTGACTACTTCACTGGTGGTGACAGGCCCTATTTGATTACTGGTTCTGATGACTCCACCGCAAAGgtacaattt-tgtactcagctgtatgttttgagtgtt-----tgatt--gttctatccagtccta---aggtggtgtgctttatggcaaaatag------------

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag
|||||||||||| ||||| |||||||| |||||||| ||||| || || |||||||| ||||| ||| |||| || || ||||||||||||||||| ||||| ||  | || ||   || | |||    |    | |  ||   | | |   |  | |  ||  |            |||||     | | ||     ||||||||
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatggtcttttagttgatacatttct---actggacattatgtgctttca----------ggttatttactagttgaatttcgtgaatcag

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctg--ttttttcctcttcatcttccctcta-atttggtttcctatatttgtatatggataggaattat-tatgccgata-aaacctttgaatcag-------------------------------
||| |||||||| ||||  ||||| || || ||||| || |||||||| ||||| || || || || ||||| ||||||||||||||||| ||||| ||||| |||  |    |||||   || ||| |   |  | | |    ||  | || ||   | ||| |  || || || |    ||| || |    |  |    |||   |  |                               
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctatt----ttctgttttttcctcttcatcttccctctaatttggtttcctatat-ttgtatatggataggaattattatgccgataaaacctttgaatcag
|||| ||||||| ||||| |||||||| || ||||| ||||| || ||||| ||||| || || |||||||| || || ||||||||||| ||||| ||||| || ||    ||    |||   | | |   |||    | ||||   | ||   |   |  |  | || ||    | | | || ||  |                     
TACACTGGATGCTCATCAGAAAGGAGTCAACTGTGTAGATTATTTCACAGGGGGTGATAAACCCTATCTAATTACCGGCTCTGATGATCATACTGCTAAGgtatgcttctggttaagcttccaatatctgtgctttgattcccctgagaattatgtatttgcagatcgtttactagtggtactttttcag---------------------

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag
||| |||||||  ||    ||||| || || |||||||||||||| || |||||||||||||| ||  |||| || |||||||||||||| ||||||||||| |        || |||| |  ||  |    |  |  | || | ||  ||    |  |||||  ||      |  ||||  ||   | |  |||           
TACTTTGGATGACCACATGAAAGGGGTAAACTGTGTTGATTACTTCACTGGTGGTGACAAGCCATACTTAATCACGGGTTCTGATGATCAAACTGCCAAGgtgt--------ttatctgatgcttattgactaaatagcttccatttatgtgcattccatttgattactttctgtgattaa-attttggtggaacag---------

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaat-cag
|||| ||||||| ||||| ||||| || ||||||||||||||||||||||| ||||| || || |||||||| || |||||||||||||| ||||| ||||| ||   |  ||  |           | ||||   |   | || |    |||      ||||   || ||  | |||  | |||  || ||| |||   ||| |||
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgataatta---------ttttcaagctgtgtttagt---atttatgcggtttg---atagaaggaaatgttcatg--gacaaatcctccaaatgcag

upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 5'ss of exon 7
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgt--ttgttttctattttctgttttttcctcttcatcttccctctaatttggtttccta---tatttgtatatggataggaattattatgccgataaaacctttgaatcag----------------------------------------------------------------------------------
 ||  | || || ||||| ||||||||||||||||| || |||||||  ||||||||    |||||||| ||||||||||| |||||||| |||||||||||  |   ||| | || ||||||  |     |   ||| |     ||| |   |        |  || |||| || |        ||       ||  |  |||||   ||                                                                                  
CACTCTAGAGGCTCATCAGAAAGGAGTGAATTGTGTCGAATACTTTAGTGGTGGTGATCGACCTTATCTCATAACTGGTTCAGATGATCAAACTGCCAAGgtaatgactttatcttgtctgttgctaatcttaattctccaggtcaatataactgaaagacttggttctataaggctttcgggatttgcatgagtatcatttttgacatagcatgacttactgtaatccatgttcgattaaatgtattctgatgtgtagttcagtaacttacaattttttccttgtcgggcag