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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCATCACATTTGGGGCCATGGGTGATAGgtattaacacaatttaccagccatcttttgcatgatataatcatcacaaacttctgcattgattaatatgaactggatattgttaaattctaataattttatctgtatttgttgatttggtatgttggggattgacacaatcttgttgcag

Basic information

species Glycine max
transcript GLYMA07G02290.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 8
ATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCATCACATTTGGGGCCATGGGTGATAGgtattaacacaatttaccagccatcttttgcatgatataatcatcacaaactt--ctgcattgattaatatgaactggatattgttaaat-----tctaata----attttatctgta--------tttgttgatttggt--atgttggggattgac----acaatcttgttgcag
||||||||||||||| |||||| || |||||||| || |||||||||||||| ||  || ||   |||||  |||| || ||||| ||||||||||| |||||| | ||     ||    |  |    |   ||||||  |  |    | ||      ||||   | ||  ||| |  |     |||  |      || ||     |  | | || |         ||||||  |||| |  |  |||| |||| ||    | ||  |  ||||||
ATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTACTCGACCATAACCTTTGGAGCCATGGGTGACAGgtatgaccatttaatattt-ctgtacgatttgtgatatctttcttgagatctgggtctcattatgtcattggaattctactactttatctatctccctgatggaggagctgaactatgagcataattttgttagtttgatcgacattggtgattaacttgaaaaacttgattgcag

upper sequence: GLYMA07G02290.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0054g00230.t01 (Vitis vinifera), 5'ss of exon 3
ATAAAACATTTCCTGATGATGGATTACTTCCCATCTACATTAATCCTCATAGTGGGGCAGCAGGCTACTCTCCCATCACATTTGGGGCCATGGGTGATAGgtattaacacaatttaccagccatcttttgcatgatataatcatcacaaactt--ctgcattgattaatatgaactggatattgttaaat-----tctaat----------aattttatctgta--tttgttgatttggt--atgttggggattgac----acaatcttgttgcag
||||||||||||||| |||||| || |||||||| || |||||||||||||| ||  || ||   || ||  |||| || ||||| ||||||||||| |||||| | ||     ||    |  |    |   ||||||  |  |    | ||      ||||   | ||| ||| |  |     |||  |      || ||          || | | |   ||  ||||||  |||| |  |  |||| |||| ||    | ||  |  ||||||
ATAAAACATTTCCTGCTGATGGTTTGCTTCCCATATATATTAATCCTCATAGAGGAACATCATCTTATTCGACCATAACCTTTGGAGCCATGGGTGACAGgtatgaccatttaatattt-ctgtacgatttgtgatatctttcttgagatctgggtctcattatgtcataggaattctactactttatctatctccctgatggaggagctgaactatgtgcataattttgttagtttgattgacattggtgattaacttgaaaaacttgattgcag