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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTTATTGCTGGGGCATCATTGGTTGCAGTGAACGTTACTGGAAATGCCATTTATGATCCCATAGGTTCAATTGTAGTCGGCAACTTACTTGGAATGgtaaagagggttcagaagacagcaaaaattccccaggcatttgaagtgatatctattttattttaattccattctgaattaaccatgcag

Basic information

species Glycine max
transcript GLYMA07G02280.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02280.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G51610.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTGTTATTGCTGGGGCATCATTGGTTGCAGTGAACGTTACTGGAAATGCCATTTATGATCCCATAGGTTCAATTGTAGTCGGCAACTTACTTGGAATGgtaaagagggttcagaagacagcaaaaattccccaggcatt-tgaagtgatatctattttattttaattccattctgaattaaccatgcag
| | |  |||||||  |||||  | || || || |   | || |||||| | || |||||||| ||||| |||||||||||||| || |||||||||||||||     |  || |    |  |  || ||        |||      |  ||  | | | |  | ||   || |  || |           
TTTGGCAATTGCTGCCGCATCTCTTGTCGCTGTTAGGATGACAGGAAATCCTATCTATGATCCTATAGGATCAATTGTAGTCGGAAATTTACTTGGAATGgtatgtctgtgtctgtgctctccttaacttgttattatattactctatattacatttctaaactaaagagcaattcgactag---------

upper sequence: GLYMA07G02280.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0054g00220.t01 (Vitis vinifera), 5'ss of exon 8
TCTTGTTATTGCTGGGGCATCATTGGTTGCAGTGAACGTTACTGGAAATGCCATTTATGATCCCATAGGTTCAATTGTAGTCGGCAACTTACTTGGAATGgtaaagagggttcagaagacagcaaaaattccccaggcatttgaagtgatatctat---tttattttaattccattctgaattaac-catgcag------
|||| ||||||| || |||||| | ||||| || ||    ||||||||| | |||||||| || |||||||||||||| || || || ||||||||||||||||  ||  || |     ||        |  ||    | || |  |   |   |    ||    | || |  | |       ||  | ||||       
TCTTATTATTGCAGGAGCATCACTAGTTGCTGTAAATACGACTGGAAATCCAATTTATGACCCAATAGGTTCAATTGTGGTTGGTAATTTACTTGGAATGgtaagtagtatttaccttccatttttttcttacctaaaaatttatatagcactaaaatattcccatcaagtgaaatagatgcaaatgcctgcaattgtat