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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACGgtaatatattctcttcacttctgcttgtgaagaaaatacaaaactaaaaaaaaagaaaagaaatctttacttttgttctagtggcctctaaatagacagtatctatttaactttttttgtgctaagaatttaattgtcttgttgaag

Basic information

species Glycine max
transcript GLYMA07G02180.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02180.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 5'ss of exon 7
-ATGTT--CATGGGCTTTTCA-ATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACGgtaat---atattctcttcacttctgcttgtgaagaaaatacaaaactaaaaaaaaagaaaagaaatctttacttttgttctagtggcctctaaatagacagtatctatttaacttt--ttttgtgctaagaatttaattgtcttgttgaag
 |  ||  ||||   |||  | |||| |   |  |   |  |||| || ||||   ||  ||   ||  | |  |  |  ||   | ||  |     ||   |||              |  || |||  |||   | |  ||   |   | |    | | | ||| | | ||   | ||||  | |   ||| ||| |          
AACTTTGACATGAAATTTCTACATGGATCCTTAACTT-TGACTATACATGTTCATGGGCTATTCAATGCTTTGCTTGCACCTCTCTATGCTGGTTCCACGgtactccctttttcttcttgttattttttttttaagtattttgtattactattttttattgtatatattagttgagtattgtttttaatgttttattttt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162286164|gb|FC456612.1|FC456612
EST:     TTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACG                         GTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGT
genomic: TTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACGgtaatatatt ... cttgttgaagGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGT
EST: gi|17153356|gb|BM143289.1|BM143289
EST:     TTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACG                         GTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGT
genomic: TTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACGgtaatatatt ... cttgttgaagGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGT
EST: gi|151393469|gb|EV263344.1|EV263344
EST:     TTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACG                         GTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGT
genomic: TTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCACGgtaatatatt ... cttgttgaagGTTGAGTTTTTGCCAAAATTTAGTGTGAGAGGAGTTTGGCAGAGATGGCGT