1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGTCAACCGATATATTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGgtgactgtgtctttaaatttctcaccaactaatgtctgcaaatactattgcatctaatttatcaaaaaatttaatgtttttttgcag
species | Glycine max |
transcript | GLYMA07G02170.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAG GTTCATATGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAGEST: gi|298197378|gb|HO044857.1|HO044857
genomic: GTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGgtgactgtgt ... ttttttgcagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAG
EST: TTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAG GTTCATATGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAGEST: gi|18039885|gb|BM308179.1|BM308179
genomic: TTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGgtgactgtgt ... ttttttgcagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAG
EST: TTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAG GTTCATATGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAGEST: gi|151398565|gb|EV268436.1|EV268436
genomic: TTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGgtgactgtgt ... ttttttgcagGTTCATATGCTAGATATGGAGTGTTTTTCGTATTTAAATCGTGCTTTAGAG
EST: TTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAG GTTCATATGCTAGATATGGAG
genomic: TTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGgtgactgtgt ... ttttttgcagGTTCATATGCTAGATATGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTCAACCGATATATTGATGAAGGTGTAGCAGAGCTTGTTCCTGGAGTTCTATTCATTGATGAGgtgactgtgtctttaaatttctcaccaactaatgtctgcaaatactattgcatctaatttatcaaaaaatttaatgtttttttgcag
- - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - GAGCTT