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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtacccactttccaaagcttctctctctatctttcaattcgctaataaatttcacaaattaacacgctcacatatggcatacatatacacacatttgagtatgtaggacaaaaatacctactaagacatataatttaggggaaagtttcctcttttctttattttcttttgaagcaacag

Basic information

species Glycine max
transcript GLYMA07G02120.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02120.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g04120.t01 (Vitis vinifera), 5'ss of exon 6
GCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtacccactttccaaagcttctctctctatctttcaattcgctaataaa-----tttcacaaattaacacgctcaca-tatggcatacatatacacacatt-tgagtatgtaggacaaaaatacctactaagacatataatttaggggaaagtttcctcttttctttattttcttttgaagcaacag---
|| || || ||||| ||||||||||||| ||||  |||||||||||| | ||||| ||||||||||||       |  |   | || |  |     ||    | |   ||     | || |  | | || | ||| |  | |  |   |     | | |  | |     ||    |      || ||  ||| | | |||  |   | || ||  |  ||  ||  ||| |     | |            
GCCCTTAGCTCTCCGTACTTGGGCAATGCATCAGGAAACATGAGGAACCAACAGTGTgtaagtacccatacatttatacccttttcccatttcccaaagcaacaagccaagatcctctctcccactcactctctctctctctctctctctctctctctctctctccccttgctcaatgtgggtaact-ttaacataaatatatgtagagagagagtgatcaattgattaatgaggatgggtttgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522662|gb|BU081473.1|BU081473
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|22522662|gb|BU081473.1|BU081473
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|22522662|gb|BU081473.1|BU081473
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|22522662|gb|BU081473.1|BU081473
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|22522662|gb|BU081473.1|BU081473
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|22522662|gb|BU081473.1|BU081473
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|13312684|gb|BG406335.1|BG406335
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|13312684|gb|BG406335.1|BG406335
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|13312684|gb|BG406335.1|BG406335
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|13312684|gb|BG406335.1|BG406335
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|13312684|gb|BG406335.1|BG406335
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-
EST: gi|13312684|gb|BG406335.1|BG406335
EST:     GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT                         C
genomic: GTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCTgtaagtaccc ... gaagcaacag-