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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTGCTCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTGGGATTAGgtatgatttagttgtcaactaattttttatttattatattttcgtattttggaagtactcatttactcacttcctttgctattttgggcttacag

Basic information

species Glycine max
transcript GLYMA07G01890.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 7
GTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTGCTCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTGGGATTAGgtatgatttagttgtcaactaattttttatttattatattttcgtattttggaagtactcatttactcacttcctttgctattttgggcttacag-----------------
||| || ||||| ||||||||||||||||||||| |||||||  |||| || || |   | ||||| ||| | || || || || || || ||||||||  ||   ||   |  | | ||   |   |   | || |   || ||||    | |   |     | |     || || ||| | ||||                    
GTACGTCCATGGAGATGTGAAGCCTGAAAATTTTTTGCTTGGACCTCCAGGCACCCTACAAGAGAAGAAACTTTTTCTCGTTGACCTTGGTTTAGgtatttttgtttttaaatttcagttcagaggaacattcttgtgagatattgggcccagtgggtcttcaaatatacatgttagttttgacttaacattgatttgtcaacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213588365|gb|DB967851.1|DB967851
EST:     TCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTGGGATTAG                         CTACTAAGTGGGAGGGATAGTACAACAGGCTCGCATGTG
genomic: TCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTGGGATTAGgtatgattta ... gggcttacagCTACTAAGTGG-AGGGATAGTACAACGGGCTCGCATGTG
EST: gi|192326672|gb|FK018514.1|FK018514
EST:     TCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTGGGATTAG                         CTACTAAGTGGAGGG
genomic: TCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTGGGATTAGgtatgattta ... gggcttacagCTACTAAGTGGAGGG