Sequence
atgc intronic sequence ATGC exonic sequenceTTGAAGCATCATTTGAAGCAGCTAAGTCTGATCCTGTTCATGCAACCAACAAAGATTTGTATCCTGTTGAGGTTATGCCGTTGCTGCCTGATTTTGATAGgtatggcaccatatataacttccataagtaaagttgttactcacccgtgtattttattaattggtattttgtatgtgatattaaagtttaaccttttgataccttctactgtcctgctttgcag
Basic information
species | Glycine max |
transcript | GLYMA07G01830.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01830.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G055520_T02 (Zea mays), 5'ss of exon 6
TTGAAGCATCATTTGAAGCAGCTAAGTCTGATCCTGTTCATGCAACCAACAAAGATTTGTATCCTGTTGAGGTTATGCCGTTGCTGCCTGATTTTGATAGgtatgg---caccatatataacttccataagtaaagttgttactcacccgtgtattttattaattggtattttgtatgtgatattaaagtttaaccttttgataccttctactgtcctgctttgcag
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TTGAAGAATCCTTTAGAGCAGCCAAGTCAAGGCCTGTTCACCAGACTAAACGTGGGATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAGgtatttacttcccagatgttgcttttatctgttacagtatttctc----------ctgactaagtgct-cttgatttatggtggaaaagttctcttctttaccagtatttt----------------
upper sequence: GLYMA07G01830.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G806309_T01 (Zea mays), 5'ss of exon 2
TTGAAGCATCATTTGAAGCAGCTAAGTCTGATCCTGTTCATGCAACCAACAAAGATTTGTATCCTGTTGAGGTTATGCCGTTGCTGCCTGATTTTGATAGgtatggcaccatatataacttccataagtaaagt-tgttactcacccgtgtattttattaattggtattttgtatgtgatattaaagtttaaccttttgataccttctactgtcctgctttgcag
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TTGAAGAATCCTTCAGAGCAGCCAAGTCAAGGCCTGTTCACCAGACTAAACGTGGCATGCAAGCTGAGTGGGTTATGCCTTTGCTACCTGATTTTGATAGgtatt-tacttcttagatgttgcatttatgtgctacagtattcatcc-------ttgatgccagatgttttggccattagtttactgagctatgccttcttgcctgcc-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254332104|gb|GR846307.1|GR846307EST: AAAGATTTGTATCCTGTTGAGGTTATGCCGTTGCTGCCTGATTTTGATAG GTATGATGATCAGTTTGTTGTTGCTGCATTTGATAATGCTCCAACAGCTGA
genomic: AAAGATTTGTATCCTGTTGAGGTTATGCCGTTGCTGCCTGATTTTGATAGgtatggcacc ... tgctttgcagGTATGATGATCAGTTTGTTGTTGCTGCATTTGATAATGCTCCAACAGCTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAAGCATCATTTGAAGCAGCTAAGTCTGATCCTGTTCATGCAACCAACAAAGATTTGTATCCTGTTGAGGTTATGCCGTTGCTGCCTGATTTTGATAGgtatggcaccatatataacttccataagtaaagttgttactcacccgtgtattttattaattggtattttgtatgtgatattaaagtttaaccttttgataccttctactgtcctgctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC