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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTTATGGGAGGAGGTGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagttttacctgtactttcttgtccgctgtttagtttggtcagctacgtgctttaacattgtcattatcttaaattaaactctccatttatctgtctaatgtgcacttcaccttccttcatcattttagtttcatgcatacccaactctaatattttaacttgttttgcatgtacaactgaatccag

Basic information

species Glycine max
transcript GLYMA07G01720.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01720.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G51980.2 (Arabidopsis thaliana), 5'ss of exon 7
ATGCTTATGGGAGGAGGTGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagttttacct-gtactttcttgtccgctgtt-tagtttggtcagctacgtgctttaacattgtcattatcttaaattaaactctccatttatctgtctaatgtgcacttcaccttccttcatcattttagtttcatgcatacccaactctaatattttaacttgttttgcatgtacaactgaatccag
|||||||||||||||||||| |||||||| || || || ||||||||||| ||||||||  |||| |||||||   | || ||| ||  || |   || || |||||| ||    |       || ||     |||  |||   | |         |  |||| |  ||||  |   | ||  ||| |   ||    | ||| ||                                                     
ATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGGGAGGTCCTGGAAAAGGAATGCACTCGTGGCTTTgtaagtcaaatcttgtatttctttttggcctattctagttttgtttattgaactagttcacgg-accatactctcgcactg-----ctaagctatcag--taata-gtgatacaagttcttatgtc----tggttacag----------------------------------------------------

upper sequence: GLYMA07G01720.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G16480.1 (Arabidopsis thaliana), 5'ss of exon 7
ATGCTTATGGGAGGAGGTGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagttttacctgtactttcttgtccgctgtttagtttggtcagctacgtgctttaacattgtcattatcttaaattaaactctccatttatctgtc-taatgtgcacttcaccttccttcatcattttagtttcatgcatacccaactctaatattttaacttgttttgcatgtacaactgaatccag
|||||||||||||||||||| ||||| || || || || ||||||||||| ||||||||  |||| ||||||| |   ||| |      ||| | || | || ||  |        ||  || ||||   ||||  | ||||  |||  |    |||| |  ||| | |||     |     |   ||| | ||| |   |  |||||                                                 
ATGCTTATGGGAGGAGGTGGCTCATTTTCTGCGGGAGGCCCTGGAAAAGGAATGCACTCTTGGCTCTgtaagtct---ctgaat----gtgttctctttctacttgcg--------gtttttcaacac--tcat-gttttaatgtaagttagttatttgttggtcatgatg-atgatgagattggtttctttattgt--ctggatgcag------------------------------------------------

upper sequence: GLYMA07G01720.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g03200.t01 (Vitis vinifera), 5'ss of exon 7
ATGCTTATGGGAGGAGGTGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagttttacctgtactttcttgtccgct----gtttagtttggtcagctacgtgctttaacattgtcattatcttaaatta-aactctccatttatctgtctaatgtgcact----tcaccttccttcatcattttagtttcatgcatacccaactctaatattttaacttgttttgcatgtacaactgaatccag
|||||||||||||||||||| |||||||| || ||||| ||||||||||| ||||||||| | ||||||||||||||| | |   | || ||   ||    | |||  ||| |||  |  ||  |      || | ||| |   |  ||| | ||       |  |||| |  | |||| |    |   ||   |  ||  || ||  ||  |||  |    |      |  ||||||   ||||| |   |             
ATGCTTATGGGAGGAGGTGGCTCATTCTCTGCGGGGGGCCCTGGAAAAGGAATGCACTCACGACTATgtaagttttacatatggctactggttttcttgtagcttaccttgatcatttgggttatggttatttattattgttggactttatagctgcttggattcctgtgttgt-tgcattaatgttgactgagtatatatttctaaatttctgctaagtttaactcgtttgtttaacccattttgaacacag------------

upper sequence: GLYMA07G01720.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0003g03230.t01 (Vitis vinifera), 5'ss of exon 6
ATGCTTATGGGAGGAGGTGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagttttacctgtactttcttgtccgctgtttagtttggtcagctacgtgctttaacattgtcattatcttaaattaaactctccatttatctgtctaatgtgcacttcaccttccttcatcattttagtttcatgcatacccaactctaatat-tttaacttgttttgcatgtacaact-gaatccag
|| ||||||||||||||||| ||||||||  | ||||| ||||||||||| ||||||||| | ||||||||||||||| | |   | || ||   ||  |   ||   |     |  ||  |||   |||| |||   |    ||  ||| |  |  |   ||  |    ||   |    | |   |  |   || ||| | ||   |    |  |||  ||  ||||||| | ||        ||  | |||  |||
ATACTTATGGGAGGAGGTGGCTCATTCTCTACGGGGGGCCCTGGAAAAGGAATGCACTCACGACTATgtaagttttacatatggctactggttttcttgtagcttaccttgatcatttgggtta---ttgttatttattattgttggactttatagctgcttggatttcctgtgttgttgcattaat-gttgattgagtat-atatttctaaatttctgctaagtttaactcgcttgtttcacccattttgaacacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193407763|gb|FK372341.1|FK372341
EST:     GGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
genomic: GGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|193626188|gb|FK573031.1|FK573031
EST:     GGGGGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
genomic: GGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|208185956|gb|GD985843.1|GD985843
EST:     GGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCCGAATGAATATCAGCAGATTCAATCTTTTTCTGCATTCA
genomic: GGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|192307375|gb|FK001963.1|FK001963
EST:     CATTCTCAGCAGGGGGGCCTGGAAGAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
genomic: CATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|193649556|gb|FK596693.1|FK596693
EST:     TGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
genomic: TGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|193680509|gb|FK624401.1|FK624401
EST:     GGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAGCAGATTCAATCTTTTTCTGCATTCA
genomic: GGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|192307855|gb|FG999334.1|FG999334
EST:     GGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
genomic: GGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|208148512|gb|GD946348.1|GD946348
EST:     GGGGGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
genomic: GGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|207688245|gb|GD672584.1|GD672584
EST:     ATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
genomic: ATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|193572722|gb|FK532959.1|FK532959
EST:     GCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAGCAGATTCAATCTTTTTCTGCATTCA
genomic: GCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
EST: gi|19054199|gb|BM732866.1|BM732866
EST:     TGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTAT                         ATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA
genomic: TGGATCATTCTCAGCAGGGGGGCCTGGAAAAGGGATGCACTCAAGGCTATgtaagtttta ... ctgaatccagATCTTAATGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCA