Sequence
atgc intronic sequence ATGC exonic sequenceTCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaagttttcactattgtatttttatgctgtgctgaaactgttctctgttgataacttggtataatttatccatttaaagggcaaaacttacagtaccat...
Basic information
species | Glycine max |
transcript | GLYMA07G01440.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 7
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaagttttc-actattgtatttttatgctgtgctgaaactgttctctgttgataacttggtataatttatccatttaaagggcaaaacttacagtaccat-
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TCAGCAGATGATCTGCGAATAAATCTTTGGAACCTGGAAATTAGCAACCAAAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTGgtaaattttccagtgtgagataagctaggcatgctgtggatttgccatttggct--tccagttagttttaaatgttaaacacacgaatgctatctaattggt
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 7
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgta--agttttcactattgtatttttatgctgtgctgaaactgttctctgttgataacttggtataatttatccatttaaagggcaaaacttacagtaccat--
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TCAGCAGATGATTTGCGGATAAATCTTTGGAATTTGGAAATTAGCAACCAAAGTTTTAACATTATTGATGTTAAACCTACAAACATGGAGGACCTGACTGgtataactttcaaatcttcaaactcttagctatgctga--ctagtgagtattaacatat--acagccttttctcacacaatgggaaaaaaatgcagtcctatat
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgta-agttttca---ctat--tgtatttttatgctgtgctgaaactgttctctgttgataacttggtat-aatttatccatttaaagggcaaaacttacagtaccat
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TCAGCTGATGATTTGCGGATAAATCTTTGGAATTTGGAAATCAGCAATCAAAGTTTCAATATTATTGATGTTAAGCCTACAAACATGGAAGATCTCACTGgtataacttccaaacctacaaagtatttcctatctgtgctgattatgtgtgtgataggtca-tagatgtgaaaataagaaaatatactcaagaagttgcaa------
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaag---ttttcactattgtatttttatgctgtgctgaaactgttctctgttgataacttggtataatttat-ccatttaaagggcaaaacttacagtaccat
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TCAGCAGATGATCTGCGAATAAACCTTTGGAATTTAGAAATTAGCAATCAGAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaacttttttcagtctgataactaattgcggtgtgcactgagcttcctgttt----cctgtaaacattaatgttatcagactaggtagattcacagtcaagt
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 7
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgta-agttttca---ctattgtatttttatgctgtgctgaaactgttctctgttgataacttggtat-aatttatccattta-aagggcaaaacttacagtaccat
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TCAGCTGATGATTTGCGGATAAATCTATGGAATTTGGAAATCAGCAATCAAAGTTTCAATATTATTGATGTTAAGCCTACAAACATGGAAGATCTCACCGgtataacttctaaacctacaaactttcttatctgtgctgattatgtgtgtgataggtca-taggtgtgaaagaaaatatacataagggaacaagttgtttt-----
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 8
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaagt---tttcactattgtatttttatgctgtgctgaaactgttctctgttga--taacttggtataatttatccatttaa-agggcaaaacttacagtaccat
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TCAGCAGATGATCTCCGAATAAATTTATGGAACTTGGAAATAAACAGCCAGAGCTTTAACATTGTTGATGTGAAGCCTACAAACATGGAAGATCTAACAGgtaattccacttagtcataatttttttaacatttatcctaagtgttgcaaatttacttgatgaagttttgccttcccatttaacaaaaaagagattgcaa------
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 5'ss of exon 7
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaagtt---ttcactattgtatt---------tttatgctgtgctgaaactgttc--tctgttgataacttggt-------ataatttatccatttaaagggcaaaacttacagtaccat----------------------------
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TCGGCTGATGATCTGCGAGTAAATCTCTGGAATTTGGAAATTAGCAACCAGAGTTTCAATATTGTTGATGTTAAGCCCACAAACATGGAGGACTTAACTGgtatgctacttctcctattttgttagatgttactttgtatggtcttaccattgattcatatgtcaacaacctccttacttttattatctatttttttcacgtttactgcttgtcg-agcatgcttctaaatgctacatggtctgtgcag
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 9
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaagtttt----cactattgtatttttatgctgtg----ctgaaactgttctctgttg----ataacttggtataattta--tccatttaaagggcaaaacttacagtaccat
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TCTGCTGATGATTTGCGAATTAATCTTTGGAATCTGGAAATTAGCAATCAAAGTTTCAATATTGTTGATGTCAAGCCTGCGAAAATGGAAGATCTATCTGgtaagccttggtctactgttatctcagtctaatatgttctcttatacggtacccatttatcatgcaattggatgcgatatccttcgaatttacgaccatattcgttcatgcag-
upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 7
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaagttt-tcactattgtatttttatgctgtgctgaaactgttctctgttgataacttg-gtataattt---atccatttaaagggcaaaacttacagtaccat
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TCAGCTGATGATCTGCGAATAAACCTTTGGAACTTGGAAATTAGCAACCAAAGCTTCAATATTGTTGATGTGAAGCCTGCAAATATGGAGGATCTAACTGgtaaaattattactaat-tatcttc-tgatattc---agttatactctgtgtgtattttgtgtgtcttttccaaggcacttttaatatatttgctaaattgacctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22525826|gb|BU084637.1|BU084637EST: AAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTG AGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCAT
genomic: AAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaagttttc ... attattgcagAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGgtaagttttcactattgtatttttatgctgtgctgaaactgttctctgttgataacttggtataatttatccatttaaagggcaaaacttacagtaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT