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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAATCGAACAGTTTGTCTATTGTATAAATAGTTACAGACAAGTTGCAATGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcatgtcaattttctttcccttgtttctgtgagtggttgtgaataaatctgaaaccatttatctttccatatgtttctag

Basic information

species Glycine max
transcript GLYMA07G00820.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00820.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 7
TATAATCGAACAGTTTGTCTATTGTATAAATAGTTACAGACAAGTTGCAATGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcatgtcaattttctttcccttgtttctgtgagtggttgtgaataaatctgaaaccatttatctttccatatgtttctag--------------------------------------------------------------------------
  |  | || ||  |||| |||||||| |||||||||||| | |  |||||||||||||||||||  ||||||||||| ||  |   ||| |||||||||||||| |  | |  ||| | | |   ||| ||       |  ||   |||    |   | ||  | | |   | ||||   |  |                                                                           
AGTGGTTGATCAACTTGTTTATTGTATCAATAGTTACAGAGAGGCAGCAATGTCGAATGATCCCAAGTTTGAGCACATAGATGTCTCCGAAAAACAGAAGgtaatagattctgtattgtttgtaaattgatt------attcttcaaaatgctcccctagcctctgaaccaccaatataaatgcaaaggatgaaggaaagtttgaaaatatccaattttggaacatttttttttatatttttaaaatttttttattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207831199|gb|GD802037.1|GD802037
EST:     TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... atgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|192316976|gb|FK006147.1|FK006147
EST:     TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... atgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|24205508|gb|BU964761.1|BU964761
EST:     TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... atgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
EST: gi|192316977|gb|FK006148.1|FK006148
EST:     TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAG                         GTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG
genomic: TGTCGAATGATCCCAGATTTGAGCACATTGACATTAACGAGAAACAGAAGgtaattgcat ... atgtttctagGTCATAAATGAATGTGTTGAAGCTGAAAAGTGGTTTAATGAGAAGCAGCAG