Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTACAGAAACTGTTGTGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatattggaatttgtttattatatcattaatgttttaattgaggttactggtaactgttagaaacccatatgccaaaacagaaaagaatttatgcc...

Basic information

species Glycine max
transcript GLYMA07G00570.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g58970.2 (Oryza sativa), 5'ss of exon 4
ACTTACAGAAACTGTTGTGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatattggaatttgtttattatatcattaatgttttaattgaggttactggtaactgttagaaacccatatgccaaaacagaaaagaatttatgcc
 ||||||||||| ||  |  ||||||| ||||| ||||||||||||||||| || ||||| || ||||||||| || | ||||||||||| ||||| |||||         || ||  ||| || |    || || || | |       || |  |   | ||   | |     |  ||                     
GCTTACAGAAACAGTCATACTGTGGCTATCAGAGGACCAGAGCTTTTGGGAAGAGATTGAAGAGGGGCCAAGGGCTCTGGGTCCCCTTGGACTTCAGCAGgt---------gagttctttttttcttgttttgatcttatgacaccaactattattc-ttattttcaccttccttttcag--------------------

upper sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G105652_T01 (Zea mays), 5'ss of exon 4
ACTTACAGAAACTGTTGTGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatattggaatttgtttattatatcattaatgttttaattgaggttactggtaactgttagaaacccatatgccaaaacagaaaagaatttatgcc
 || || || || ||  |  ||||||| ||||||||||||  ||||||||| || |||||  ||||  ||| ||||||||| ||||| ||||| ||||||||| | |  |        ||| |||  |  ||    |   || ||   ||  |   || | | |        | |||                       
CCTCACTGAGACAGTCATACTGTGGCTCTCAGAAGACCAGGCCTTTTGGGAAGAGATTGAACAAGGAGCAAAGCCTTTAGGCCCCCTAGGTCTGCAACAGgtaaggtcatttccccctttttttactttctttgcttcccaagtgttatttttcaaaaatttca-----ttctttgcag---------------------

upper sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G090573_T01 (Zea mays), 5'ss of exon 5
ACTTACAGAAACTGTTGTGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgta---tgatattggaatttgtttattatat-cattaa--tgttttaattgaggttactggtaactgttagaaacccatatgccaaaacagaaaagaatttatgcc-----------------------------------------------------------------------------
|||||| ||  | ||  || | ||||| ||||| ||||||||||||||||| ||  |||| ||||| |||||| || | |||||  |||| ||||| ||||||   | || ||  |  || |  || | |  |||| |   | ||| ||| |||  | || |  |  ||  ||        ||            |  ||| |  |                                                                             
ACTTACGGAGGCAGTCATGCTTTGGCTCTCAGACGACCAGAGCTTTTGGGAAGAGGTTGAAGAAGGACCAAGGGCTCTGGGTCCGGTTGGACTTCAGCAGgtaatctcattttaaaccttttagatcagaggcattcacccggttttattaagg--aatgctctccattttaacttgtcgcgcgcgtgtgtgtgcgtgtttgtttccagcatttcagttttcaaaacctcccaggccttcgcctgacagctgacattcccttttactttgccttcctttccag

upper sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 7
lower sequence: AT5G49830.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTTACAGAAACTGTTGTGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatg-atattggaatttgtttattatatcattaatgttttaattgaggttactggtaactgttagaaacccatatgccaaaacagaaaagaatttatgcc--
| | ||||| |||||  | || |||||||| | ||||||||||||||||||||| ||||||||||| ||  | ||||| || || ||||| || |  ||||| || | | |     ||| ||  | ||| ||   | | || |  |||   |  |  || ||||    |||  | |    ||||| |   | || | |  |  
ATTAACAGAGACTGTGATCTTATGGCTTTCTGGAGACCAGAGCTTTTGGGATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAGgtttgtacactcattcttgctt-ctgtat-at--gtatattcagcgag--catcga-aattgttgtgtacctttgttaacaaaca-acctgcatctgtcacag

upper sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 5
ACTTACAGAAACTGTTGTGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtat--gatattggaatttgtttat-tatatcattaatgttttaattgaggttactggtaactgttagaaacccatatgccaaaacagaaaagaatttatgcc
||| || ||||||||  |  | |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |  || ||||       || || |  |||     |||||   | ||| || ||   |        | |  ||  ||| ||| ||                
ACTCACTGAAACTGTCATTATATGGCTTTCTGAAGACCAAAGCTTTTGGGATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAGgtttttgaaattgatccccattgatctgcatctgctctgtttctgtcgag-ttcctaaaactgacctaatattcacttgctaaatcatgtgtag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23063971|gb|BU578744.1|BU578744
EST:     ATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAG                         TTCTATTTGGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTAC
genomic: ATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatatt ... cattgtgcagTTCTATTTGGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTAC
EST: gi|10843874|gb|BF067235.1|BF067235
EST:     GGTCCCCTTGGTCTTCAACAG                         TTCTATTTGGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTAC
genomic: GGTCCCCTTGGTCTTCAACAGgtatgatatt ... cattgtgcagTTCTATTTGGATATGAAGTTTGTCGTATGTTTTGCCTCCCATGGTCGGTAC