Sequence
atgc intronic sequence ATGC exonic sequenceATACACAAAGGCAGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTGgtaattgtttgatttttttttttactttgttttgatgtgtccacacattagcattgatgattatttcatcttcatctgggtctcagcagattactactta...
Basic information
species | Glycine max |
transcript | GLYMA07G00350.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g33490.1 (Oryza sativa), 5'ss of exon 7
ATACACAAAGGCAGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTGgtaattgtttgattttt----ttttttactttgttttgatgtgtccacacattagcattgatgattatttcatcttcatctgggtctcagcagattactactta
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ATACACCAAAGCTGCTGATGTCGGAGCTGATCTTGTGGGAAAGGTTGAGCAGGGAATACCAGAAGATGATCCTCGTAATCCTGCTGTCATTGCTGACTTGgtattgatacttctcttgaagcctgttgtatttttttattattttctatcataagcat--atgattttttcttgttgga-tatgcctagacataa-gtcatatg
upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G075900_T01 (Zea mays), 5'ss of exon 7
ATACACAAAGGCAGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTGgtaat--tgtttgatttttttttttactttgttttgatgtgtccacacattagcattgatgattatttcatcttcatctgggtctcagcagattactactta
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ATACACGAAAGCTGCTGATGTTGGAGCTGATCTGGTTGGAAAAGTTGAGCAGGGAATACCAGAAGATGATCCTCGTAACCCAGCTGTCATTGCTGACTTGgtattgatgttctcaagtaaaatttggaatgctgtttatttttaattatttttcattgaagactgatcaattatgttcaaattacctgttattagcgatg--
upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G78920.1 (Arabidopsis thaliana), 5'ss of exon 7
ATACACAAAGGCAGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTGgtaattgtttgatttttttttt-tactttgttttgatgtgtccacacattagcattgatgattatttcatctt---catctgggtctcagcagattactactta----------------------------------------------
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ATATACTAAGGGAGCTGATGTTGGGGCAGATCTCGTTGGGAAAGTTGAGCAGGGAATTCCCGAGGATGATCCTCGAAATCCTGCTGTTATTGCTGATTTGgtatttgatctttgttctttttgtttcttactttcttgattctgtg-attcccaaacgtgacatccttgtttggggcatatatcactctacaagggtttgcttgtgttttcgtcatttaggcatttaaagccattttcatcttcttgtag
upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 7
ATACACAAAGGCAGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTGgtaattgtttgatttttttttttac-tttgttttgatgtgtccacacattagcattgat--gattatttcatcttcatctgggtctcagcagattactactta--
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ATATACAAAAGCAGCAGATGTTGGAGCTGATCTGGTTGGAAAGGTGGAGCAGGGAATACCTGAAGATGATCCTCGAAATCCTGCTGTCATTGCAGATTTGgta-----tcgaccttctccttaatgttcatttctttgtttaaaagcacttgtgttaaccagaatgttgcttgttggtttacatttaaattggtttcttgtccat
upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S105_42V6.2 (Physcomitrella patens), 5'ss of exon 7
ATACACAAAGGCAGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTGgtaattgt---ttgatttttttttttactt-----tgttttgatgtgtccac---acattagcattgatgattatttcatcttcatctg-ggtctcagcagattactactta------------------------------------------------------
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ATATACAAAAGCTGCAGACGTAGGTGCAGATCTGGTGGGTAAAGTGGAACAAGGGATCCCTGAAGATGATGCAAGGAATCCTGCCGTAATTGCTGATCTGgtatgtgtaaatgcgttcttttctgtatctgtaagtgtctagtcgtgtctgttttacttcagcgttggttctagtcctctctatacttgcaatgtcaaatagaatttattaaaaatttagtacgtctattggcagtccagttattgaagcctgtacattggagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193482825|gb|FK447042.1|FK447042EST: AGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTG GTTGGTGACAATGTGGGAGATTGTGCTGCTCGAGGTGCTGATTCTTTTTGA
genomic: AGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTGgtaattgttt ... ttattttaagGTTGGTGACAATGTGGGAGATTGTGCTGCTCGAGGTGCTGAT-CTTTTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACACAAAGGCAGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGATCTGgtaattgtttgatttttttttttactttgttttgatgtgtccacacattagcattgatgattatttcatcttcatctgggtctcagcagattactactta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT