1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGgtttgtcttgcaactggatattgatgcatcaattttgttaagtcatgcttaatttaccgacttgtctttccatgtag
species | Glycine max |
transcript | GLYMA06G45160.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAG GTCCAACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGTGCTCCAGEST: gi|31474417|gb|CD416445.1|CD416445
genomic: TCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGgtttgtcttg ... ttccatgtagGTCCAACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGTGCTCCAG
EST: CTACTGCTTGGATCAAAGGAGAAG GTCCAACCATCTGGTTTCTTGCTATAATCTATTTTATTTCTGGTGCTCCAGEST: gi|13181293|gb|BG352633.1|BG352633
genomic: CTACTGCTTGGATCAAAGGAGAAGgtttgtcttg ... ttccatgtagGTCCAACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGTGCTCCAG
EST: TCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAG GTCCAACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGTGCTCCAGEST: gi|21887940|gb|BQ741153.1|BQ741153
genomic: TCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGgtttgtcttg ... ttccatgtagGTCCAACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGTGCTCCAG
EST: GCAAAGGACGCAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAG
genomic: GCAAAGGACGCAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGgtttgtcttgcaactggatattgatgcatcaattttgttaagtcatgcttaatttaccgacttgtctttccatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA