Sequence
atgc intronic sequence ATGC exonic sequenceAGTGAAGAGGCCCCCATAGATGATCTCATGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAGgtacaatattcattttactcaaaaaaattgtacactctatggaatagagatggaacaagatttgttagaggaagactattgtttattttaattaatttcaattgtgctgcag
Basic information
species | Glycine max |
transcript | GLYMA06G44340.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 6
AGTGAAGAGGCCCCCATAGATGATCTCATGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAGgtacaatattcattttactcaaaaaaattgtacactctatgg----aatagagatgga-acaagatttgttagaggaagacta--ttgtttattttaattaattt-caattgtgctgcag-------------------
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GGTGAAGAGTCCTCTATTGAAGACTTAATGGATCTTGTGCAGCAAATTGTTTCTTTTCACATGAAGgtgagatccttgtcattcttacttttcttgtaataacaaggggtccattgtatattaatataagtttcattgataggcgtgaaatttgcgcctcttgttttgttcacatttttgaaggattcccttttgttctttgcag
upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 6
AGTGAAGAGGCCCCCATAGATGATCTCATGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAGgtacaatattcattttactcaaaaaaattgtacactctatggaatagagatggaacaagatttgttagaggaagactattgtttattttaattaatttcaattgtgctgcag
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AGTGAGGAGGCCTCTATTGACGATTTAATGGAGCTTGTGCAACAAATTGTTGCTTTTCACATGAAGgtgaattcctaa----actaatagggcttg-agatt------agcacctctgcgattt-atttatttctaaacgatt-tcatttactccttgcag-----------------
upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 7
AGTGAAGAGGCCCCCATAGATGATCTCATGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAGgtacaata--ttca-----ttttactcaaaaaaattgtacactctatggaatagagat----------------------ggaacaagatttgtta-gag----gaagactattgtttattttaattaattt-----caattgtgctgcag
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AGTGAAGAGGCTCCAATTGATGATCTAATGGAGCTCGTACAACAAATTGTTGCTTTTCACATGAAGgtgtgttaatttcaaaagttttgattgggttcacatctgtgtaacaaagaacgaaaatattggtgtctgttatggcttttgtaactgcatttgtcatgagattagaaaacttttattttttgtttctgatatttatacatttgcattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193712443|gb|FK650166.1|FK650166EST: TGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAG CATAATGCAGAACCTGAAGCTGTTGATCTTTTGATGGAG
genomic: TGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAGgtacaatatt ... tgtgctgcagCATAATGCAGAACCTGAAGCTGTTGATCTTTTGATGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTGAAGAGGCCCCCATAGATGATCTCATGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAGgtacaatattcattttactcaaaaaaattgtacactctatggaatagagatggaacaagatttgttagaggaagactattgtttattttaattaatttcaattgtgctgcag
- - - - - - - - - - - - - CATGGA