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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGAAGGTTATGATGAACTTGAAGAGGAAGAAGACATGGAGGATTTTGGTGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacatttagtttagaagctttgcaacatggattgaatatttttcacacgttcaaatatatattgaatgacattttttgtaagtgatgaaatcgtgaat...

Basic information

species Glycine max
transcript GLYMA06G43930.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208231628|gb|GE029463.1|GE029463
EST:     TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG                         CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGC
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGC
EST: gi|208152125|gb|GD944386.1|GD944386
EST:     TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG                         CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: gi|51335751|gb|CO979617.1|CO979617
EST:     CGATGATGAAAATG                         CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
genomic: CGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: gi|193452111|gb|FK421037.1|FK421037
EST:     AAGTCTCAGGGTGATTTTGACGATGATGAAAATG                         CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGC
genomic: AAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGC
EST: gi|6726040|gb|AW310439.1|AW310439
EST:     TGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG                         CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
genomic: TGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: gi|193324432|gb|FK292670.1|FK292670
EST:     TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG                         CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: gi|193680659|gb|FK621149.1|FK621149
EST:     TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG                         CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAG
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAG
EST: gi|193718636|gb|FK652606.1|FK652606
EST:     TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATG                         CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
genomic: TGGTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGACGATGATGAAAATGgtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCAA
EST: gi|208227168|gb|GE024185.1|GE024185
EST:     GTTTTGCAACTCTCAAGTCTCAGGGTGATTTTGTACGATGATGAAAATAG                         CTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCA
genomic: GTTTTGCAACTCTCAAGTCTCAGGGTGATTTTG-ACGATGATGAAAAT-Ggtaacattta ... actaatgcagCTGAAAGCACTGATGATGAAGAGGAAGAAGCAATTGATCAGAGTAGAGCA