Sequence
atgc intronic sequence ATGC exonic sequenceATTCACTAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTTGAGCTTgtaagatctctttctctcccttcaaaccatattgaggacaatggtagtggttgttacttttgggagatatatagtgcataccatacaaaacaatttaaat...
Basic information
species | Glycine max |
transcript | GLYMA06G41510.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g04420.1 (Oryza sativa), 5'ss of exon 6
ATTCACTAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTTGAGCTTgtaaga------tctctttctctcccttcaaaccatattgaggacaatggtagtggttgttactt-ttgggagatatatagtgcataccatacaaaacaatttaaat----------------------------
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GTTCACAAAGAAGAGTGATGTATACAGCTACGGCGTTTTGCTGTTTGAAATGATTGCTGGCAGAAACCCTCAACAAGGTCTAATGGAATATGTAGAGCTTgtaaggaagccccctacttagttccttactctttttgttcaagaatttgttccttactcttttttgttcaagaattgttttttctcagaacattaaggtttgtaattgctgacttacaatgcaatctatgatcag
upper sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 6
ATTCACTAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTTGAGCTTgtaagatctctttctctcccttcaaaccatat---tgaggacaatggtagtggttgttacttttgggagatatatagtgcataccatacaaaacaatttaaat
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CTTCACTAAGAAGAGTGATGTTTACAGTTTTGGGGTATTGCTTTTTGAACTTATTGCTGGCCGGAATCCTCAACAGGGGCTCATGGAATATGTTGAGCTTgtaagatctctttcgctctctctcacacacacacctatgcgtgcatgcacacacaaataagcatatcagaggaagtgaaaaaagtatggaatgttaatgg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58014430|gb|CX701172.1|CX701172EST: TTATAGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTTGAGCTT GCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAGGAAATCGTGGATTCT
genomic: TTATAGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTTGAGCTTgtaagatctc ... ggatcattagGCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAGGAAATCGTGGATTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCACTAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTTGAGCTTgtaagatctctttctctcccttcaaaccatattgaggacaatggtagtggttgttacttttgggagatatatagtgcataccatacaaaacaatttaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc