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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAATGATGGAAATCGAGTTCTTGGATTGTCTGATGACGAACTAGCTCAGAGAAACTTGCTGAAAGGCATAACTGCTGACGAGAGTGCAACTGTTCATgtgagttacataagtgtcatgaacctattttagcactgagtggtttttgtttttgatgaattgtgcttgccttttgttgtag

Basic information

species Glycine max
transcript GLYMA06G30000.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G30000.1 (Glycine max), 5'ss of exon 7
lower sequence: AC209454.3_FGT001 (Zea mays), 5'ss of exon 5
------CAAAAATGATGGAAATCGAGTTCTTGGATTGTCTGATGACGAACTAGCTCAGAGAAACTTGCTGAAAGGCATAACTGCTGACGAGAGTGCAACTGTTCATgtgag-----ttacataagtgtcatgaacctattttagcactgagtggtttttgtttttgatgaattgtgcttgccttttgttgtag
       |||   |||||||  |  | ||  ||  |||||  ||| || || ||||||||||||||| |||||||||| |||||||| ||||||||||| || ||||| ||      | |||     |  |  ||  ||  |  || | ||   ||| ||   |     | || ||||  ||  ||   |   
AGATATTAAATTGGATGGAAGCCAGGCTCCAGGGATGTCTTCTGATGAGCTTGCTCAGAGAAACTTGTTGAAAGGCATCACTGCTGATGAGAGTGCAACAgtacatgttagactccctccatgcaacttttatactaatacttccatt-agcattttatgaagtattgaagttatgctatccaattacag---

upper sequence: GLYMA06G30000.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G318635_T01 (Zea mays), 5'ss of exon 9
CAAAAATGATGGAAATCGAGTTCTTGGATTGTCTGATGACGAACTAGCTCAGAGAAACTTGCTGAAAGGCATAACTGCTGACGAGAGTGCAACTGTTCATgtgag-----ttacataagtgtcatgaacctattttagcactgagtggtttttgtttttgatgaattgtgcttgccttttgttgtag
||||   ||||||| ||  | ||  ||  |||||  ||| || || ||||||||||||||| |||||||||| |||||||| ||||||||||| || ||||| ||      | |||     |  |  ||  ||  |  || | ||   ||| ||   |     | || ||||  ||  ||   |   
CAAATTGGATGGAAGTCAGGCTCCAGGGATGTCTTCTGATGAGCTTGCTCAGAGAAACTTGTTGAAAGGCATCACTGCTGATGAGAGTGCAACAGTACATgttagactccctccatgcaacttttatactaatacttccatt-agcattttatgaagtattgaagttatgctatccaattacag---

upper sequence: GLYMA06G30000.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0037g00840.t01 (Vitis vinifera), 5'ss of exon 9
CAAAAATGATGGAAATCGAGTTCTTGGATTGTCTGATGACGAACTAGCTCAGAGAAACTTGCTGAAAGGCATAACTGCTGACGAGAGTGCAACTGTTCATgtgagttacataagtgtc--atgaacctattttagcactgagtggtttt--tgtttttgatgaattgtgcttgccttttgttgtag-----------------------------
 |||||||||||   ||  ||||||||  ||||  | || || ||  |||||||||| || || ||||| ||||||||||| || ||||||||||||||||| ||| | | |  | |   ||      | |||  |     || ||  |   || ||| |   ||   |  ||   | |  | ||                              
TAAAAATGATGGGGGTCAGGTTCTTGGGATGTCAAAAGAGGAGCTTTCTCAGAGAAATTTACTTAAAGGAATAACTGCTGATGAAAGTGCAACTGTTCATgtaagtaaaacattttttcaatctgttcagtttttcttgatgttgtcctaacgtctttaaattatgaagtgtgttatatactatatttaatgctgaggtctcattctgtcttcag