Sequence
atgc intronic sequence ATGC exonic sequenceTGATTATTTTCAAGAAATGTATGGATTTACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTGAACTATTTGCCAATGGAGgtaatccttgctttaaatttaatcaaattacattattctagcttttccatagagaactcatgtgaatcttgtatcag
Basic information
species | Glycine max |
transcript | GLYMA06G23920.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 7
lower sequence: AC189879.3_FGT003 (Zea mays), 5'ss of exon 6
TGATTATTTTCAAGAAATGTATGGATTTACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTGAACTATTTGCCAATGGAGgtaatccttgctttaaattt---aatcaaattacattattctagcttttccatagagaactcatgtgaatcttgtatcag-------------------------------
|| || || | ||||||||||| || || || | || ||||||| ||||||||||| || |||| |||| ||||| ||||||||| ||||||||||| | | | | ||| | | | || | | | ||| | | || | |||| | || || |
GGAGTACTTCAAGGAAATGTATGGTTTCACCATTCAGCATCCTCATCTTCCTTGCCTTCAGGTTGGAAACCAAAAGAAGGCGAACTATTTACCAATGGAGgtcagtatagatgctaatcacaaacttatgttgcctgtcaattatctttacgtttctaattaatgttagactctaataatataacgttgtaatattgagtttttttaccag
upper sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 7
TGATTATTTTCAAGAAATGTATGGATTTACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTGAACTATTTGCCAATGGAGgtaatccttgctttaa-atttaatcaaattacattattctagcttttccatagagaactcatgtgaatcttgtatcag---------------
||| || ||||| || |||||||||||||| || ||||||||||||||||||||| |||||||| | || ||||| ||||| || || |||||||||||| | || || ||| |||| | || | || || | | | ||| | | | ||
TGAGTACTTTCAGGAGATGTATGGATTTACCATTCGATATTCTCATCTACCTTGCCTCCAAGTAGGTAACCAGAGGAAAGTGAATTACTTACCAATGGAGgtaggctcacattcaatattccttcaacgttttggatgcagaaaatttca-ggcgtctctagctgacttatatttcctaacctatcctcccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192297193|gb|FG988289.1|FG988289EST: CTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTGAACTATTTGCCAATGGAG GCATGCAAGATAGTTGGGGGCCAGAGATATACAAAAGGGCTAAATGAAAAG
genomic: CTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTGAACTATTTGCCAATGGAGgtaatccttg ... cttgtatcagGCATGCAAGATAGTTGGGGGCCAGAGATATACAAAAGGGCTAAATGAAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATTATTTTCAAGAAATGTATGGATTTACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTGAACTATTTGCCAATGGAGgtaatccttgctttaaatttaatcaaattacattattctagcttttccatagagaactcatgtgaatcttgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA