1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGACTGCCCTTGTTGACTCAAGGCATAAGAAGGTTTTTAAGGTGAAAAACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAGgtataatcaataattcaagttacatgctcttattgtgtgtctggggtaccattatctaatctctctgtatttttaacag
species | Glycine max |
transcript | GLYMA06G21900.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAG GCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAGEST: gi|151412765|gb|EV282577.1|EV282577
genomic: ACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAGgtataatcaa ... tttttaacagGCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAG
EST: ACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAG GCTGAAAGCCAAAATATCCGCGCAAACGTGCTTCTTAACCGAAAGCGTGAGEST: gi|58014328|gb|CX701070.1|CX701070
genomic: ACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAGgtataatcaa ... tttttaacagGCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAG
EST: CTGCATAACTGACATTGATCCTGAGA-GG-AAAAGAGGGAAAAAGAGANG GCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAGEST: gi|192323525|gb|FK017106.1|FK017106
genomic: CTGCATAACTGACATTGATCCTGAGAGGGAAAAAGA-GGAAAAAGAGAAGgtataatcaa ... tttttaacagGCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAG
EST: ACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAG GCTGAAAGCCAAAATATCCGCGCAAACGTGCTTCTTAACCGAAAGCGTGAG
genomic: ACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAGgtataatcaa ... tttttaacagGCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGACTGCCCTTGTTGACTCAAGGCATAAGAAGGTTTTTAAGGTGAAAAACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAGgtataatcaataattcaagttacatgctcttattgtgtgtctggggtaccattatctaatctctctgtatttttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA