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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGAAGTCCGAAGATCTAGAAGACTTACAGTTTCTTTCATATGTACTGTTGCCAACTATGAGTATGGATTTTTTTGGCATTTTTATCAGGCAAGTAGGgtatcacatccttttaagagacaaatatgctgacaatgacattttaaatcaatcttatgttaattattgtaaaattcacaaatatccagtatcttccgac...

Basic information

species Glycine max
transcript GLYMA06G18810.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 7
---------AGCAGAAGTCCGAAGATCTAGAAGACTTACAGTTTCTTTCATATGTACTGTTGCCAACTATGAGTATGGATTTTTTTGGCATTTTTATCAGGCAAGTAGGgtatcacatccttttaagagacaaatatgctgacaat--gacattttaaatcaatcttat-gttaattattgtaaaattcacaaa-tatccagtatcttccgac
         ||||||||| || || ||||| || || |||| |||||||||||||||||| || || |||||||||||||| || ||||| ||||||||||||||| |    | ||||  |||   |    || |   | || |||  |   || |   |   | || | | |   ||    | | ||       || |||||          
GACAGGCTTAGCAGAAGTTCGTAGGTCTAGGAGGCTAACAGCTTCTTTCATATGTACTGTGGCTAATTATGAGTATGGATTCTTCTGGCACTTTTATCAGgcaagtggaaatttacattgttt---gtattaattgcccagaaaatttggtgttctttgttgcttttcttgcttgataacccagatttagtgctctagccagt----------

upper sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S178_54V6.1 (Physcomitrella patens), 5'ss of exon 8
---------AGCAGAAGTCCGAAGATCTAGAAGACTTACAGTTTCTTTCATATGTACTGTTGCCAACTATGAGTATGGATTTTTTTGGCATTTTTATCAGGCAAGTAGGgtatcacatccttttaagagacaaatatg--ctgacaatgacattttaaatcaatcttatgttaattattgtaaaattcacaaatatccagtatcttccgac
           |||||   ||  | ||  |  || | |||||||||||| | |||||||| |||||||| ||||| || ||||  |||||||| |||||||      |  | | ||  | |    |    ||  |  |  |    |||||| | |||||  | |    ||||   | ||| | |  | ||   |   ||  ||        
AACTGGTTCTACAGAAAGACGTCGGTCACGGCGATTAACAGTTTCTTTCTTCTGTACTGTCGCCAACTACGAGTACGGGTTTTACTGGCATTTCTATCAGgtttactgc-tctaactgcttacctacttgcatgttggacccataaatgacttgttaaaggatttcggtgtt---ttttgcacatgtaacttttcatcaagatg-------

upper sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S363_39V6.1 (Physcomitrella patens), 5'ss of exon 6
---------AGCAGAAGTCCGAAGATCTAGAAGACTTACAGTTTCTTTCATATGTACTGTTGCCAACTATGAGTATGGATTTTTTTGGCATTTTTATCAGGCAAGTAGGgtatcacatccttttaagagacaaatatgctg---acaatgacattttaaatcaatcttatgttaattattgtaaaattcacaaatatccagtatcttccgac
           |||||   ||  | || ||  |  | || ||||||||| | || |||||||||||||| ||||| || ||||  |||||||| |||||||    |  |||     | |   |||   ||   |||| |||   |||| ||  |    |    |||||  ||    | |    | || ||  |     |||||         
AACTGGTTCTACAGAAAGACGTCGGTCGAGGCGTTTAACTGTTTCTTTCTTTTGCACTGTTGCCAACTACGAGTACGGGTTTTACTGGCATTTCTATCAGg----tttggtgctgaaactgcttacttgatgcatatcctgtctacaaagaactgactagaagatcttg-gtgttctgtctccacatgcaacacacaacagtagt-------

upper sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S9_129V6.1 (Physcomitrella patens), 5'ss of exon 8
---------AGCAGAAGTCCGAAGATCTAGAAGACTTACAGTTTCTTTCATATGTACTGTTGCCAACTATGAGTATGGATTTTTTTGGCATTTTTATCAGGCAAGTAGGgtatcacatccttttaagagacaaatatgctgacaatgacattttaaatcaatcttatgttaattattgtaaaattcacaaatatccagtatcttccgac
          ||||||  |||  | ||| |  || |  | ||||| ||  | || ||||||||||||||||||||||| || |  |||||||| |||||||    ||   | |     |||  |          | |||| ||||    || || |  ||                                                 
AACTGGTTCTGCAGAAAGCCGTCGGTCTCGGCGATTGTCCGTTTCGTTTTTCTGCACTGTTGCCAACTATGAGTATGGTTTCTACTGGCATTTCTATCAGgttt-tattttcttttgccctcctgtatacttgttctgcttacaaaaggatgttta--cag------------------------------------------------

upper sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ14061 (Selaginella moellendorffii), 5'ss of exon 6
---------AGCAGAAGTCCGAAGATCTAGAAGACTTACAGTTTCTTTCATATGTACTGTTGCCAACTATGAGTATGGATTTTTTTGGCATTTTTATCAGGCAAGTAGGgtatcacatccttttaagagacaaatatgctgacaatgacattttaaatcaatcttatgttaattattgtaaaattcacaaatatccagtatcttccgac
           | |||||||||||||||||| | || || |||||||||||||| ||||| || ||||| || ||||| || |  ||||| || || |||| |  |     |   ||||||   ||   | |      || |   |  |   |||                                                      
GACAGGTCTTTCTGAAGTCCGAAGATCTAGACGGCTCACCGTTTCTTTCATATGCACTGTCGCAAACTACGACTATGGCTTCTACTGGCACTTCTACCAGgtagatcaacaa--gcatcctaacaatccagactatcactaaagctccctacttag-----------------------------------------------------