1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTATAAAAGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGgtacataaatattcagtaaaaatgctacgagtttttaattgggtacatatgctgttatacttccaaaacatggtgtttatgatgccaactgaatacttgatattggcaatggttttgtag
species | Glycine max |
transcript | GLYMA06G18530.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCG GACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGGEST: gi|7925599|gb|AW831625.1|AW831625
genomic: GTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGgtacataaat ... ggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGG
EST: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCG GACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGGEST: gi|192330548|gb|FK021251.1|FK021251
genomic: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGgtacataaat ... ggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGG
EST: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCG GACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGGEST: gi|10843290|gb|BF066597.1|BF066597
genomic: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGgtacataaat ... ggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGG
EST: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCG GACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGTTTGTATACTGGEST: gi|15201058|gb|BI424670.1|BI424670
genomic: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGgtacataaat ... ggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGG
EST: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCG GACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGGEST: gi|10232123|gb|BE801011.1|BE801011
genomic: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGgtacataaat ... ggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGG
EST: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCG GACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGG
genomic: GACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGgtacataaat ... ggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATAAAAGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGgtacataaatattcagtaaaaatgctacgagtttttaattgggtacatatgctgttatacttccaaaacatggtgtttatgatgccaactgaatacttgatattggcaatggttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG