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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag

Basic information

species Glycine max
transcript GLYMA06G17930.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17930.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G30230.2 (Arabidopsis thaliana), 5'ss of exon 6
TAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag
| || ||| |||| ||  | || || || || ||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||   || |     || ||| | || |||  |||    | |      | || | || | |     | |   ||  | | ||| | |  ||| ||| |  |  |                        
TTGTCTCTATTGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAACAAGATATGTAAgt---ttcatgaacctattcgtaattctttttaagctgtga------tcttttgttagataatgtggtgtgtaactgtctatgttggattgaatcataatgcaggag--------------------

upper sequence: GLYMA06G17930.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G30230.1 (Arabidopsis thaliana), 5'ss of exon 6
----TAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag
    | || ||| |||| ||  | || || || || ||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||   || |     || ||| | || |||  |||    | |      | || | || | |     | |   ||  | | ||| | |  ||| ||| |  |  |                        
GACCTTGTCTCTATTGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAACAAGATATgtaagt---ttcatgaacctattcgtaattctttttaagctgtga------tcttttgttagataatgtggtgtgtaactgtctatgttggattgaatcataatgcag-----------------------

upper sequence: GLYMA06G17930.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
----TAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag
    | || ||| | || ||  | || || || || ||||| ||||| || |||||||||||||||||||||||||||||||| |||||||| || ||||||||||   |  |     |||||||  |    |   ||| |    || | ||||| ||   | |     | |   ||  |   | |  | | ||| ||    | |||| ||                    
GACCTTGTATCTATCGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATgtaagt---tacacgaaccttttctcaactacttagaatgct--gagattgttttatac--gataatttggtgtgtaactaactgttggatattgaattgaatcataatgcag------------------

upper sequence: GLYMA06G17930.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g01540.t01 (Vitis vinifera), 5'ss of exon 7
----TAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacag
    | |||||||| ||    ||||||||||||||  | || ||||| ||||  ||||| ||||||||||| ||||||||||| |||||||| || ||||||||||   |||  |||   | |  |      |||  || |    |     |  |||  |   |   | | ||| |                                                       
GACTTGGTTTCTGTGGACGACCTTATTGAGGAACAGTTGACTGTTGAACCCACGAATGAGTATGTCCAGAGCTGTGACATTGTAGCCTTCAACAAGATATgtaagttcattttcatgttgtgtggt-----atagggatccaaccatcctttgctgtgctctgttctatgtttcttgag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336730|gb|GR842909.1|GR842909
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|12773256|gb|BG238183.1|BG238183
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|6072821|gb|AW102208.1|AW102208
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATANAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254335479|gb|GR847007.1|GR847007
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254329001|gb|GR833373.1|GR833373
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|6070838|gb|AW100225.1|AW100225
EST:     ATGAATATGCCCAGAGTTGTGACATTGTGGCCTTCAAATAAAAT-TATAA                         ---CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: ATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAA-TAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|8285537|gb|BE023096.1|BE023096
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254343730|gb|GR857486.1|GR857486
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCA-TAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|57575395|gb|CX548370.1|CX548370
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|10234447|gb|BE803335.1|BE803335
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|57575104|gb|CX548079.1|CX548079
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254346824|gb|GR856546.1|GR856546
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254329000|gb|GR833372.1|GR833372
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|209721178|gb|BW659190.1|BW659190
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|254343731|gb|GR857487.1|GR857487
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|21887772|gb|BQ740985.1|BQ740985
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|26269428|gb|CA820491.1|CA820491
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|213596126|gb|DB977488.1|DB977488
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|151403128|gb|EV272938.1|EV272938
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAA-TAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCA-CGGGAG
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAG
EST: gi|151400262|gb|EV270076.1|EV270076
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|209728947|gb|BW655001.1|BW655001
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|16342208|gb|BI967803.1|BI967803
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|8403148|gb|BE058782.1|BE058782
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATA--T--                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|14990691|gb|BI316364.1|BI316364
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|23734643|gb|BU765560.1|BU765560
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|192296995|gb|FG990296.1|FG990296
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCA
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCA
EST: gi|6726934|gb|AW311214.1|AW311214
EST:     AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT--AA                         A--CTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: AATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAgtatttttag ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT