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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAAACCATTCATTGGACACATGAGCAATCGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagttaatcttcattgtatttacttcattccatatctgttttttttttgtgccttaccttgaaccatgtgagaattaattgagtttctaaagttgctt...

Basic information

species Glycine max
transcript GLYMA06G16680.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 9
CCACAAACCATTCATTGGACACATGAGCAATCGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagttaatcttcattgtatttactt--cattccatatctgtt-ttttttttgtgccttaccttgaaccatgtgagaattaattgagtttctaaagttgctt---
|    || |       | ||     |   | | | | |||||||| || ||||||||||| |||||||||||||||||  |   ||| |||||||||||||| ||||      ||    || | |||  ||||| | || | |  ||  | || || | |       |  |    |  | || || |    |   | |  | |   
CAGTGAAGCGCCACAAGAACCAGCTAAACACCACAATAGATTGGGACCAGCAGGCCTTGCATTGCATTATGCAAATATCATCAATCAGATTGATACTCTTgtaagtt------cacaaaatctgcttaacattctaaatttttaattactattttgtcatctagaagataaatcaaccaatatttcaacaccagcaatgtcatgag

upper sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 8
CCACAAACCATTCATTGGACACATGAGCAATCGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagttaatct-tcattgtatttacttcatt---ccatatctgtttt---------ttttttgtgccttac-cttgaaccatgtgagaattaattgagtttctaaagttgctt--------------------------------------
|    ||         | ||     |   | |   | |||||||| || ||||||||||| ||||||||||| |||||  |   ||| ||||| | |||||| |||  |  |    || ||   |  | ||    | |||||  | ||          ||  ||  | ||   | | |||||| |       |||  ||| || ||  |   ||                                      
CAGTGAAGAGCCACAAGAACCTGCCAAACACCATAATAGATTGGGACCAGCAGGCCTTGCATTGCATTATGCTAATATCATCAATCAGATTGACAATCTTgtaagtccacatactcttctagagatcttatcgaactatatcgttattagaagataacttggtgaacattgtacatcaaccatattcattgcaat-aagtctccaacttcagttttttcacaatattttaataaggattggtcaattggtag

upper sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G08660.1 (Arabidopsis thaliana), 5'ss of exon 9
CCACAAACCATTCATTGGACACATGAGCAATCGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagttaatcttcattgtatttacttcattccat---atctgttttttttttgtgcct-taccttgaaccatgtgagaattaattgagtttctaaagttgctt
 ||   | |    |  |||          ||    |||||||||| ||||| || |||||||| ||||||||||||||| |  | || ||||| || |||||||||  |    | | | |||   ||||||   |    |  ||| | |  || ||  | | |  | || ||| |       |  || ||||| |  | |    
TCAACCATCGAAGAAAGGAGCTGCAGAATATGATAAAAGATTGGGACCTGCTGGTCTTGCTTTACATTATGCAAATATAATTGTGCAGATTGACACACTTgtgagtgcacaaacgtagcatt-gtttcatttggtttggttggttctgtacttctgtgtattctctcaatcatatcg----catgtgtgtttcaatgggtatag

upper sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 8
CCACAAACCATTCATTGGACACATGAGCAATCGCCAAAGATTGGGCCCTGCAGGCCTTGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTgtgagt---taatcttcattgtatt-----tacttcattccatatctgttttttttttgtgccttaccttgaaccatgtgagaattaattgagtttctaaagttgctt
    | |||  | | ||||    ||||  |||  ||||||||||| ||||| || ||||| ||||||||||||||||| ||  | ||||||||| | |||||||||   | ||||   |||  ||     || ||  |||   || |  |||  |||  |   |||  ||     || | ||         |  ||||| | ||    
----ACACCTGTAAATGGATCTGTGAGTGATCATCAAAGATTGGGACCTGCTGGTCTTGCATTGCATTATGCAAATATTGTTATGCAAATTGATGCCCTTGTGAgtatatgatctctgttgatttccttatatttttttctgcatgtactttcatttattcagttattttcttgtatcttaggcagttacaaacttctataatt----