1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGATCTAATAAGCGGAGTATCATGCAAAACTCCACATGAATGGGTTGATAAAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatgcagaaaactttttgttgacctttgtgtaattaattaatgtcacatgctgatgaatgaaattgcag
species | Glycine max |
transcript | GLYMA06G15510.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCAT GTAGTTGCTTATGATTTTGGAATCAAGCEST: gi|7234233|gb|AW569572.1|AW569572
genomic: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGC
EST: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCAT GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCAEST: gi|151397657|gb|EV267530.1|EV267530
genomic: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
EST: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCAT GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCAEST: gi|208181091|gb|GD980158.1|GD980158
genomic: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
EST: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCAT GTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
genomic: AAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatg ... gaaattgcagGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCTAATAAGCGGAGTATCATGCAAAACTCCACATGAATGGGTTGATAAAACAAAGCAACAATGGGAGTTTAGTAAAGTGCCTGGAGAGACTTTCCATgtaagtaatgcagaaaactttttgttgacctttgtgtaattaattaatgtcacatgctgatgaatgaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA