1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CAATGGCCAATGGTCTTTGTTTTGTCCCAGTGAAGCACCGGGTTTGACAGATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCTTCAATATGAAAGAGAAgtaagttcattcttcacatgcaaatattgttgggcctttcttgaagtgcttttacttgttagttattagtgctttgtttttacaaaatatattttataacacgtag
species | Glycine max |
transcript | GLYMA06G15350.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTGTT-GGGTGAGAAATTTGAGGAGCTTTATCTTCAATATGAAAGAGAA GGAAAAGCAATGAAGGTTGTCCAGGCACAGAGCCTCTGGTTCGAAATTCTGEST: gi|193439856|gb|FK409433.1|FK409433
genomic: ATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCTTCAATATGAAAGAGAAgtaagttcat ... taacacgtagGGAAAAGCAATGAAGGTTGTCCAGGCACAGAGCCTCTGGTTCGAAATTCTG
EST: TTGAGGAGCTTTATCTTCAATATGAAAGAGAA GG-AAAGCAATGAAGGTTGTCCAGGCACAGAGCCTCTGGTTCGAAATTCTGEST: gi|193482200|gb|FK447935.1|FK447935
genomic: TTGAGGAGCTTTATCTTCAATATGAAAGAGAAgtaagttcat ... taacacgtagGGAAAAGCAATGAAGGTTGTCCAGGCACAGAGCCTCTGGTTCGAAATTCTG
EST: ATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCTTCAATATGAAAGAGAA GGAAAAGCAATGAAGGTTGTCCAGGCACAGAGCCTCCGGTTCGAAATTCTG
genomic: ATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCTTCAATATGAAAGAGAAgtaagttcat ... taacacgtagGGAAAAGCAATGAAGGTTGTCCAGGCACAGAGCCTCTGGTTCGAAATTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGGCCAATGGTCTTTGTTTTGTCCCAGTGAAGCACCGGGTTTGACAGATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCTTCAATATGAAAGAGAAgtaagttcattcttcacatgcaaatattgttgggcctttcttgaagtgcttttacttgttagttattagtgctttgtttttacaaaatatattttataacacgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA