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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATTTTGATAGCCATGATTGGGATGATACTATATTCTTACTATTGCACTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgttttaaccacggccaactttgggtgtctctagttttttgcattgtcacaatcatttacttgaagtacattctgtcaccctgtttctttttaatgtttccag

Basic information

species Glycine max
transcript GLYMA06G14970.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258567|gb|BG881475.1|BG881475
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: gi|21677608|gb|BQ629959.1|BQ629959
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: gi|6913826|gb|AW395356.1|AW395356
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: gi|23733226|gb|BU764800.1|BU764800
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: gi|254324664|gb|GR834089.1|GR834089
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: gi|23732948|gb|BU764655.1|BU764655
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: gi|16348409|gb|BI974004.1|BI974004
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: gi|21257143|gb|BQ454031.1|BQ454031
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: gi|13477571|gb|BG507400.1|BG507400
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
EST: gi|254314908|gb|GR829901.1|GR829901
EST:     CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAG                         GCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA
genomic: CTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgtttta ... atgtttccagGCAAGAGAAGATGAATCTGATCCTCTGATGAATGTGGAAAATGGAAGTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTATTTTGATAGCCATGATTGGGATGATACTATATTCTTACTATTGCACTCTTGAGAATCAGCAAAAAACTGTCGAAGCTGCATCGCAATCATCCCAGgtttgttttaaccacggccaactttgggtgtctctagttttttgcattgtcacaatcatttacttgaagtacattctgtcaccctgtttctttttaatgtttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC