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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctacctttctaatggtgctgtatttctcag

Basic information

species Glycine max
transcript GLYMA06G14050.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgttttttggttcatgatgcctatt-gcatgtattagaagatgaatgaccat---agtgaac----taacaatgcttgc-tacc---tttctaatggt--gctgtatttctcag---------
|||| | | |||| || ||| ||||||||||||| || | || ||||| || ||||||||||| |||||||| || || ||||||||| ||||||||||| | | | || |||| |||| ||| | || ||| || | |||| | ||| | || ||| | ||||| | || ||||
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G132286_T01 (Zea mays), 5'ss of exon 4
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta-gtgttttttggttcatgatgcctattgcat-gtattagaagatgaatgaccatagtgaacta-acaatgcttgcta------cctttctaatggtgctgtatttctcag
|||| | | ||||| || || ||||| |||||||| || | || || || || ||||||||||||||||||||||||||||||||||| | ||||||||| | || | | ||| | || | | || | ||| | | ||||| || ||| || | |||| | |||
TGCTCTAAATCTGTCAGGAACTATGCTCGGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTGCCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgcaaccttcaggaatcaacatactttgttttaagttcatggctcaaggttcatgcttgtttctggtatgctctttaaaaaaaagtttgccatttttctgtgatctgcag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G036634_T01 (Zea mays), 5'ss of exon 14
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta-gtgttttttggttcatgatgcctattgcat-gtattagaagatgaatgaccatagtgaacta-acaatgcttgcta-----cctttctaatggtgctgtatttctcag
|||| ||| ||||| || || |||| ||||||| || | || || || || ||||||||||||||||||||||||||||||||||| | ||||||||| | || | | ||| | || | | || | ||| | | ||||| || ||| || | |||| | |||
TGCTCTGAATCTGTCAGGAACTGTGCTCAGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTGCCATTGCACCAGTCAATCCAACATTCGTACCCAGGgtatgcaaccttcaggaatcaacatactttgttttaagttcatggctcaaggttcatgcttgtttctggtatgctctttaaaaaaagtttgccatttttctgtgatctgcag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G173428_T02 (Zea mays), 5'ss of exon 4
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta-gtgttttttggt--tcatgatgcctattgcatgtat-tagaagatgaatgaccatagtgaacta-acaatgcttgctacc-tttctaatggtgctgtatttctcag
|||| ||| ||||| || || |||| |||||||| || | || || || || || |||||||||||||||||||||||||||||||| | ||||||||| | || | ||| || | | | | || ||| | | | | | || | | || | ||| || | |||| | |||
TGCTCTGAATCTGTCAGGAACTGTGCTCGGATATTATCCTGTCAGGGTTCTGCCATCGAAAACTGCCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgcaaccttcaggaatcaacatacttgtgttaagttcatagcccaaggttcattcttgtatctggtatggtatttaaaaaagtttgccatttttctgtgatctgcag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G161649_T01 (Zea mays), 5'ss of exon 3
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta-gtgttttttggttcatgatgcctattgcat-gtattagaagatgaatgaccatagtgaacta-acaatgcttgcta-----cctttctaatggtgctgtatttctcag
|||| ||| || || || || |||| |||||||| || | || || || || ||||||||| ||||||||||||||||||||||||| | ||||||||| | || | | ||| | || | | || | ||| | | ||||| || ||| || | |||| | |||
TGCTCTGAATCTATCAGGAACTGTGCTCGGATATTATCCTGTCAGGGTTCTGCCATCAAAAACTACCATTGCACCAGTCAATCCAACATTCCTACCCAGGgtatgcaaccttcaggaatcaacatactttgttttaagttcatggctcaaggttcatgcttgtttctggtatgctctttaaaaagagtttggcatttttctgtgatctgcag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G349794_T01 (Zea mays), 5'ss of exon 6
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta---gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag
|||| ||| ||||| || | ||||||||||||||| || | | || ||||| ||||||||||||||||||||||||||| |||||| | ||||||||| | || | | | | || | | || | | |||| ||| | | ||| | ||| || | | |||| | |||
TGCTCTGAATCTGTCAGGAAACATGCTTGGATATTATCCTGTCAATGTTCTACCGTCAAAAACTGCCATTGCACCAGTCAATGAAACATTCCTACCCAGGgtatgcaaatcttctagaac-caacatgcatgtcttaagttcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctccag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G398795_T01 (Zea mays), 5'ss of exon 7
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag
|||| ||| ||||| || ||| ||||||||||||| || | | || ||||| |||||||||||||||||||||||||| |||||| | ||||||||| || | | || |||| | | | || | | | |||| ||| | | ||| | ||| || | | |||| | |||
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTGTCAATGTTCTACCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttctggaaccaacatgcttgtcttaagt--tcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctacag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 3
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag
|||| ||| ||||| || | | ||||||||||||| || | | || ||||| |||||||||||||||||||||||||| |||||| | ||||||||| || | | || |||| | | | || | | | |||| ||| | | ||| | ||| || | | |||| | |||
TGCTCTGAATCTGTCAGGAAACGTGCTTGGATATTATCCTGTCAATGTTCTACCATCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttctggaaccaacatgcttgtcttaagt--tcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctccag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G069102_T01 (Zea mays), 5'ss of exon 5
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag
|||| ||| ||||| || ||| ||||||||||||| || | | || || || |||||||||||||||||||||||||| |||||| | ||||||||| || | | |||| | | | || | | | |||| ||| | | ||| | ||| | | | | |||| | |||
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTGTCAAGGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccgacatgcttgtcttaagt--tcatggctcaatgttcatgctctatctgatatggtctctaagaaagctggttgtttttctgtgctctgcag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G166091_T01 (Zea mays), 5'ss of exon 7
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag
|||| || ||||| | ||| ||||||||||||| || | | || || || |||||||||||||||||||||||||| |||||| | ||||||||| || | | |||| | | | || | | | |||| ||| | | ||| | ||| || | | |||| | |||
TGCTCCGAATCTGTCAAGAACCGTGCTTGGATATTATCCTGTCAATGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaactaacatgcttgtcttaagt--tcattgctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctgcag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G044246_T01 (Zea mays), 5'ss of exon 1
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag
|||| ||| ||||| || ||| ||||||||||||| || | | || || | |||||||||||||||||||||||||| |||||| | ||||||||| || | || |||| | | | || | | | |||| ||| | | ||| | ||| || | | |||| | |||
TGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTATCAATGTTCTGCTGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttccggaaccaacatgcttgtcttaagt--tcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctgcag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G175541_T01 (Zea mays), 5'ss of exon 1
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta----gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag
|||| ||| ||||| | ||| ||||||||||||| || | | || || || |||||||||||||||||||||||||| |||||| | ||||||||| ||| | || |||| | | | || | | | |||| ||| | | ||| | ||| || | | |||| | |||
TGCTCTGAATCTGTCAAGAACCGTGCTTGGATATTATCCTGTCAATGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACAAAACATTCCTACCCAGGgtatgcaaacctttcggaaccaacatgcttgtcttaagt--tcatggctcaatgttcatgctctatatgatatggtctctaagaaagttggtcgattttctgtgctctacag

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G456149_T01 (Zea mays), 5'ss of exon 7
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgt----agtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctacctttctaatggtgctgtatttctcag
|||| ||| ||||| || ||| |||||||||||| ||| | | || || || |||||||||||||||||||||||||| |||||| | |||||||| | || | || || | | | | || | | | |||| ||| | | ||| | ||| || | || | ||||
TGCTCTGAATCTGTCAGGAACCGAGCTTGGATATTATCCAGTCAATGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAACATTCCTACCCAGGgtatgcaaaccttcccgaaccaacatccttgtcttaagt--tcatggctcaatgttcatgctctatctgatatggtctctaag-----aaagttggtcgattttctg-

upper sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctacctttctaatggtgctgtatttctcag-----
|||| |||| || | || || |||||||| ||||| ||| ||||||||||||||||||||||||| |||||||| || || |||||||||||||| ||||| | | | || || ||| || | | || || ||| | || | | | | ||| ||| | | | || ||
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgtg--gccaatcttttatctt------tgtttgatcttatcattcatatgacatat-ttactttttagaactggatataggctacaatgatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343884|gb|GR857640.1|GR857640
EST:     TA-C-TC-AAAACTGCCATTGCACCAGTCAATCC-ACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|6481922|gb|AW201193.1|AW201193
EST:     TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|21888556|gb|BQ741769.1|BQ741769
EST:     TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|192319171|gb|FK009111.1|FK009111
EST:     TACCTTCAAAAACTGCCATCGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|193559320|gb|FK513783.1|FK513783
EST:     TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACTAAATAT
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCAC-AAATAT
EST: gi|9205289|gb|BE331513.1|BE331513
EST:     TCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|192319172|gb|FK009112.1|FK009112
EST:     TACCTTCAAAAACTGCCATCGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|254324021|gb|GR840446.1|GR840446
EST:     CCCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATAT
genomic: -CCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTG-CCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATAT
EST: gi|6481926|gb|AW201197.1|AW201197
EST:     TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|151397590|gb|EV267463.1|EV267463
EST:     TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|21677144|gb|BQ629495.1|BQ629495
EST:     TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|8403307|gb|BE058941.1|BE058941
EST:     TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|15661924|gb|BI699295.1|BI699295
EST:     TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
EST: gi|254343883|gb|GR857639.1|GR857639
EST:     TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGG                         TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgtagtgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATC