Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGgtaatgtttcttctttgttagagttgcctattacatttaaaagatgattgaccagagtagctgataatgcatctctttggtctgacctatctaacggtgctatatttctcag

Basic information

species Glycine max
transcript GLYMA06G14030.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14030.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGgtaa--tgtttcttctttgttag---agttgccta--ttacatt--taaaagatgattgaccagagtagctgataatgcatct----ctttggtctgac--ctatctaacggtgctatatttctcag
|||| | ||  |||| |||||| ||||||||||||| ||  | || ||||| || ||||||||||| ||||| |||||||| ||||||||| ||||||||||||  ||  ||| |    ||     | |||| ||  || ||||  |||    |  || |    | |   ||  ||| | | |    ||   |||| |   ||  |   |  |  | |      |||
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag

upper sequence: GLYMA06G14030.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 5'ss of exon 6
TGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCCCCTGTTAATCCAACATTTTTGCCCAGGgtaat-gtttcttctttgttagagttgcctattacatttaaaagatgattgaccagagtagctgata-atgcatctctttggtctg-acctatctaacggtgctatatttctcag
|||| |||   || | ||||| |||||||| ||||| ||  ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |  || | || |||||  |      || |||  |||    |||   | | ||    |  ||| | ||  |  | || |  ||| |  ||    ||  || |           
TGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGgtgagagtatattttttgt--ggccaatcttttatctttgtttgat--cttatcatt-catatgacatatttactttttagaactggatataggctacaatgatg----------